Gene : Carub.0005s1670 C. rubella v1.1
Defline:  (1 of 1) PTHR16166//PTHR16166:SF98 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 // SUBFAMILY NOT NAMED Genomic Order:  1670
Name:  ? Carub.0005s1670 Secondary Identifier:  ? PAC:39226102
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1670 0.5kb upstream 0.5kb upstream 14732 true scaffold_5: 8772652-8787383 Capsella rubella
Carub.0005s1670 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 8786884-8787383 Capsella rubella
Carub.0005s1670 0.5kb downstream 0.5kb downstream 14732 true scaffold_5: 8772152-8786883 Capsella rubella
Carub.0005s1670 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 8772152-8772651 Capsella rubella
Carub.0005s1670 1.0kb upstream 1.0kb upstream 15232 true scaffold_5: 8772652-8787883 Capsella rubella
Carub.0005s1670 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 8786884-8787883 Capsella rubella
Carub.0005s1670 1.0kb downstream 1.0kb downstream 15232 true scaffold_5: 8771652-8786883 Capsella rubella
Carub.0005s1670 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 8771652-8772651 Capsella rubella
Carub.0005s1670 2.0kb upstream 2.0kb upstream 16232 true scaffold_5: 8772652-8788883 Capsella rubella
Carub.0005s1670 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 8786884-8788883 Capsella rubella
Carub.0005s1670 2.0kb downstream 2.0kb downstream 16232 true scaffold_5: 8770652-8786883 Capsella rubella
Carub.0005s1670 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 8770652-8772651 Capsella rubella
Carub.0005s1670 5.0kb upstream 5.0kb upstream 19232 true scaffold_5: 8772652-8791883 Capsella rubella
Carub.0005s1670 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 8786884-8791883 Capsella rubella
Carub.0005s1670 5.0kb downstream 5.0kb downstream 19232 true scaffold_5: 8767652-8786883 Capsella rubella
Carub.0005s1670 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 8767652-8772651 Capsella rubella
Carub.0005s1670 10.0kb upstream 10.0kb upstream 24232 true scaffold_5: 8772652-8796883 Capsella rubella
Carub.0005s1670 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 8786884-8796883 Capsella rubella
Carub.0005s1670 10.0kb downstream 10.0kb downstream 24232 true scaffold_5: 8762652-8786883 Capsella rubella
Carub.0005s1670 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 8762652-8772651 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360388 5261 Brassicaceae View MSA
123830490 5264 Brassicales-Malvales View MSA
124337349 5266 SBM View MSA
124238186 5268 Malvidae View MSA
124073517 5270 Rosid View MSA
123745544 5271 Pentapetalae View MSA
122793580 5272 Eudicot View MSA
122042840 5273 Angiosperm View MSA
121343832 5274 Embryophyte View MSA
123379927 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain