Gene : Carub.0005s1605 C. rubella v1.1
Defline:  (1 of 4) PTHR11751//PTHR11751:SF431 - SUBGROUP I AMINOTRANSFERASE RELATED // 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4-RELATED Genomic Order:  1605
Name:  ? Carub.0005s1605 Secondary Identifier:  ? PAC:39226218
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ETHYL-PWY Capsella rubella pathologic  
Crubella PWY-7270 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1605 0.5kb upstream 0.5kb upstream 2200 true scaffold_5: 8521365-8523564 Capsella rubella
Carub.0005s1605 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 8523065-8523564 Capsella rubella
Carub.0005s1605 0.5kb downstream 0.5kb downstream 2200 true scaffold_5: 8520865-8523064 Capsella rubella
Carub.0005s1605 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 8520865-8521364 Capsella rubella
Carub.0005s1605 1.0kb upstream 1.0kb upstream 2700 true scaffold_5: 8521365-8524064 Capsella rubella
Carub.0005s1605 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 8523065-8524064 Capsella rubella
Carub.0005s1605 1.0kb downstream 1.0kb downstream 2700 true scaffold_5: 8520365-8523064 Capsella rubella
Carub.0005s1605 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 8520365-8521364 Capsella rubella
Carub.0005s1605 2.0kb upstream 2.0kb upstream 3700 true scaffold_5: 8521365-8525064 Capsella rubella
Carub.0005s1605 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 8523065-8525064 Capsella rubella
Carub.0005s1605 2.0kb downstream 2.0kb downstream 3700 true scaffold_5: 8519365-8523064 Capsella rubella
Carub.0005s1605 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 8519365-8521364 Capsella rubella
Carub.0005s1605 5.0kb upstream 5.0kb upstream 6700 true scaffold_5: 8521365-8528064 Capsella rubella
Carub.0005s1605 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 8523065-8528064 Capsella rubella
Carub.0005s1605 5.0kb downstream 5.0kb downstream 6700 true scaffold_5: 8516365-8523064 Capsella rubella
Carub.0005s1605 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 8516365-8521364 Capsella rubella
Carub.0005s1605 10.0kb upstream 10.0kb upstream 11700 true scaffold_5: 8521365-8533064 Capsella rubella
Carub.0005s1605 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 8523065-8533064 Capsella rubella
Carub.0005s1605 10.0kb downstream 10.0kb downstream 11700 true scaffold_5: 8511365-8523064 Capsella rubella
Carub.0005s1605 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 8511365-8521364 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362882 5261 Brassicaceae View MSA
123798444 5264 Brassicales-Malvales View MSA
124296078 5266 SBM View MSA
124247956 5268 Malvidae View MSA
124066319 5270 Rosid View MSA
123745403 5271 Pentapetalae View MSA
122791160 5272 Eudicot View MSA
122042730 5273 Angiosperm View MSA
121351183 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain