Gene : Carub.0005s1941 C. rubella v1.1
Defline:  (1 of 8) 4.1.2.13 - Fructose-bisphosphate aldolase / Fructose-1,6-bisphosphate triosephosphate-lyase Genomic Order:  1941
Name:  ? Carub.0005s1941 Secondary Identifier:  ? PAC:39226020
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Sequence Feature Displayer

Ontology Annotation Displayer

10 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella CALVIN-PWY Capsella rubella pathologic  
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY66-373 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1941 0.5kb upstream 0.5kb upstream 2335 true scaffold_5: 9763486-9765820 Capsella rubella
Carub.0005s1941 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9765321-9765820 Capsella rubella
Carub.0005s1941 0.5kb downstream 0.5kb downstream 2335 true scaffold_5: 9762986-9765320 Capsella rubella
Carub.0005s1941 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9762986-9763485 Capsella rubella
Carub.0005s1941 1.0kb upstream 1.0kb upstream 2835 true scaffold_5: 9763486-9766320 Capsella rubella
Carub.0005s1941 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9765321-9766320 Capsella rubella
Carub.0005s1941 1.0kb downstream 1.0kb downstream 2835 true scaffold_5: 9762486-9765320 Capsella rubella
Carub.0005s1941 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9762486-9763485 Capsella rubella
Carub.0005s1941 2.0kb upstream 2.0kb upstream 3835 true scaffold_5: 9763486-9767320 Capsella rubella
Carub.0005s1941 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9765321-9767320 Capsella rubella
Carub.0005s1941 2.0kb downstream 2.0kb downstream 3835 true scaffold_5: 9761486-9765320 Capsella rubella
Carub.0005s1941 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9761486-9763485 Capsella rubella
Carub.0005s1941 5.0kb upstream 5.0kb upstream 6835 true scaffold_5: 9763486-9770320 Capsella rubella
Carub.0005s1941 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9765321-9770320 Capsella rubella
Carub.0005s1941 5.0kb downstream 5.0kb downstream 6835 true scaffold_5: 9758486-9765320 Capsella rubella
Carub.0005s1941 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9758486-9763485 Capsella rubella
Carub.0005s1941 10.0kb upstream 10.0kb upstream 11835 true scaffold_5: 9763486-9775320 Capsella rubella
Carub.0005s1941 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9765321-9775320 Capsella rubella
Carub.0005s1941 10.0kb downstream 10.0kb downstream 11835 true scaffold_5: 9753486-9765320 Capsella rubella
Carub.0005s1941 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9753486-9763485 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378662 5261 Brassicaceae View MSA
123836011 5264 Brassicales-Malvales View MSA
124341755 5266 SBM View MSA
124249698 5268 Malvidae View MSA
124060719 5270 Rosid View MSA
123751552 5271 Pentapetalae View MSA
122795732 5272 Eudicot View MSA
122046933 5273 Angiosperm View MSA
121346548 5274 Embryophyte View MSA
123428415 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain