Gene : Carub.0005s1884 C. rubella v1.1
Defline:  (1 of 2) PTHR22849:SF38 - E3 UBIQUITIN-PROTEIN LIGASE PUB22-RELATED Genomic Order:  1884
Name:  ? Carub.0005s1884 Secondary Identifier:  ? PAC:39224532
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1884 0.5kb upstream 0.5kb upstream 1808 true scaffold_5: 9542394-9544201 Capsella rubella
Carub.0005s1884 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9543702-9544201 Capsella rubella
Carub.0005s1884 0.5kb downstream 0.5kb downstream 1808 true scaffold_5: 9541894-9543701 Capsella rubella
Carub.0005s1884 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9541894-9542393 Capsella rubella
Carub.0005s1884 1.0kb upstream 1.0kb upstream 2308 true scaffold_5: 9542394-9544701 Capsella rubella
Carub.0005s1884 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9543702-9544701 Capsella rubella
Carub.0005s1884 1.0kb downstream 1.0kb downstream 2308 true scaffold_5: 9541394-9543701 Capsella rubella
Carub.0005s1884 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9541394-9542393 Capsella rubella
Carub.0005s1884 2.0kb upstream 2.0kb upstream 3308 true scaffold_5: 9542394-9545701 Capsella rubella
Carub.0005s1884 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9543702-9545701 Capsella rubella
Carub.0005s1884 2.0kb downstream 2.0kb downstream 3308 true scaffold_5: 9540394-9543701 Capsella rubella
Carub.0005s1884 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9540394-9542393 Capsella rubella
Carub.0005s1884 5.0kb upstream 5.0kb upstream 6308 true scaffold_5: 9542394-9548701 Capsella rubella
Carub.0005s1884 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9543702-9548701 Capsella rubella
Carub.0005s1884 5.0kb downstream 5.0kb downstream 6308 true scaffold_5: 9537394-9543701 Capsella rubella
Carub.0005s1884 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9537394-9542393 Capsella rubella
Carub.0005s1884 10.0kb upstream 10.0kb upstream 11308 true scaffold_5: 9542394-9553701 Capsella rubella
Carub.0005s1884 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9543702-9553701 Capsella rubella
Carub.0005s1884 10.0kb downstream 10.0kb downstream 11308 true scaffold_5: 9532394-9543701 Capsella rubella
Carub.0005s1884 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9532394-9542393 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360588 5261 Brassicaceae View MSA
123837010 5264 Brassicales-Malvales View MSA
124350441 5266 SBM View MSA
124240092 5268 Malvidae View MSA
124068371 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain