Gene : Carub.0005s2211 C. rubella v1.1
Defline:  (1 of 1) PTHR11946//PTHR11946:SF89 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // METHIONYL-TRNA SYNTHETASE Genomic Order:  2211
Name:  ? Carub.0005s2211 Secondary Identifier:  ? PAC:39224081
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2211 0.5kb upstream 0.5kb upstream 4034 true scaffold_5: 10753271-10757304 Capsella rubella
Carub.0005s2211 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 10756805-10757304 Capsella rubella
Carub.0005s2211 0.5kb downstream 0.5kb downstream 4034 true scaffold_5: 10752771-10756804 Capsella rubella
Carub.0005s2211 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 10752771-10753270 Capsella rubella
Carub.0005s2211 1.0kb upstream 1.0kb upstream 4534 true scaffold_5: 10753271-10757804 Capsella rubella
Carub.0005s2211 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 10756805-10757804 Capsella rubella
Carub.0005s2211 1.0kb downstream 1.0kb downstream 4534 true scaffold_5: 10752271-10756804 Capsella rubella
Carub.0005s2211 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 10752271-10753270 Capsella rubella
Carub.0005s2211 2.0kb upstream 2.0kb upstream 5534 true scaffold_5: 10753271-10758804 Capsella rubella
Carub.0005s2211 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 10756805-10758804 Capsella rubella
Carub.0005s2211 2.0kb downstream 2.0kb downstream 5534 true scaffold_5: 10751271-10756804 Capsella rubella
Carub.0005s2211 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 10751271-10753270 Capsella rubella
Carub.0005s2211 5.0kb upstream 5.0kb upstream 8534 true scaffold_5: 10753271-10761804 Capsella rubella
Carub.0005s2211 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 10756805-10761804 Capsella rubella
Carub.0005s2211 5.0kb downstream 5.0kb downstream 8534 true scaffold_5: 10748271-10756804 Capsella rubella
Carub.0005s2211 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 10748271-10753270 Capsella rubella
Carub.0005s2211 10.0kb upstream 10.0kb upstream 13534 true scaffold_5: 10753271-10766804 Capsella rubella
Carub.0005s2211 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 10756805-10766804 Capsella rubella
Carub.0005s2211 10.0kb downstream 10.0kb downstream 13534 true scaffold_5: 10743271-10756804 Capsella rubella
Carub.0005s2211 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 10743271-10753270 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362064 5261 Brassicaceae View MSA
123831392 5264 Brassicales-Malvales View MSA
124342754 5266 SBM View MSA
124242853 5268 Malvidae View MSA
124065458 5270 Rosid View MSA
123752968 5271 Pentapetalae View MSA
122787831 5272 Eudicot View MSA
122046373 5273 Angiosperm View MSA
121347151 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain