Gene : Carub.0005s2392 C. rubella v1.1
Defline:  (1 of 6) K01883 - cysteinyl-tRNA synthetase (CARS, cysS) Genomic Order:  2392
Name:  ? Carub.0005s2392 Secondary Identifier:  ? PAC:39225178
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2392 0.5kb upstream 0.5kb upstream 3965 true scaffold_5: 11399172-11403136 Capsella rubella
Carub.0005s2392 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11399172-11399671 Capsella rubella
Carub.0005s2392 0.5kb downstream 0.5kb downstream 3965 true scaffold_5: 11399672-11403636 Capsella rubella
Carub.0005s2392 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11403137-11403636 Capsella rubella
Carub.0005s2392 1.0kb upstream 1.0kb upstream 4465 true scaffold_5: 11398672-11403136 Capsella rubella
Carub.0005s2392 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11398672-11399671 Capsella rubella
Carub.0005s2392 1.0kb downstream 1.0kb downstream 4465 true scaffold_5: 11399672-11404136 Capsella rubella
Carub.0005s2392 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11403137-11404136 Capsella rubella
Carub.0005s2392 2.0kb upstream 2.0kb upstream 5465 true scaffold_5: 11397672-11403136 Capsella rubella
Carub.0005s2392 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11397672-11399671 Capsella rubella
Carub.0005s2392 2.0kb downstream 2.0kb downstream 5465 true scaffold_5: 11399672-11405136 Capsella rubella
Carub.0005s2392 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11403137-11405136 Capsella rubella
Carub.0005s2392 5.0kb upstream 5.0kb upstream 8465 true scaffold_5: 11394672-11403136 Capsella rubella
Carub.0005s2392 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11394672-11399671 Capsella rubella
Carub.0005s2392 5.0kb downstream 5.0kb downstream 8465 true scaffold_5: 11399672-11408136 Capsella rubella
Carub.0005s2392 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11403137-11408136 Capsella rubella
Carub.0005s2392 10.0kb upstream 10.0kb upstream 13465 true scaffold_5: 11389672-11403136 Capsella rubella
Carub.0005s2392 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11389672-11399671 Capsella rubella
Carub.0005s2392 10.0kb downstream 10.0kb downstream 13465 true scaffold_5: 11399672-11413136 Capsella rubella
Carub.0005s2392 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11403137-11413136 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380473 5261 Brassicaceae View MSA
123802736 5264 Brassicales-Malvales View MSA
124299904 5266 SBM View MSA
124250049 5268 Malvidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain