Gene : Carub.0005s2435 C. rubella v1.1
Defline:  (1 of 2) PTHR31375//PTHR31375:SF3 - FAMILY NOT NAMED // POLYGALACTURONASE ADPG1-RELATED Genomic Order:  2435
Name:  ? Carub.0005s2435 Secondary Identifier:  ? PAC:39224180
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2435 0.5kb upstream 0.5kb upstream 2925 true scaffold_5: 11566316-11569240 Capsella rubella
Carub.0005s2435 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11568741-11569240 Capsella rubella
Carub.0005s2435 0.5kb downstream 0.5kb downstream 2925 true scaffold_5: 11565816-11568740 Capsella rubella
Carub.0005s2435 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11565816-11566315 Capsella rubella
Carub.0005s2435 1.0kb upstream 1.0kb upstream 3425 true scaffold_5: 11566316-11569740 Capsella rubella
Carub.0005s2435 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11568741-11569740 Capsella rubella
Carub.0005s2435 1.0kb downstream 1.0kb downstream 3425 true scaffold_5: 11565316-11568740 Capsella rubella
Carub.0005s2435 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11565316-11566315 Capsella rubella
Carub.0005s2435 2.0kb upstream 2.0kb upstream 4425 true scaffold_5: 11566316-11570740 Capsella rubella
Carub.0005s2435 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11568741-11570740 Capsella rubella
Carub.0005s2435 2.0kb downstream 2.0kb downstream 4425 true scaffold_5: 11564316-11568740 Capsella rubella
Carub.0005s2435 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11564316-11566315 Capsella rubella
Carub.0005s2435 5.0kb upstream 5.0kb upstream 7425 true scaffold_5: 11566316-11573740 Capsella rubella
Carub.0005s2435 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11568741-11573740 Capsella rubella
Carub.0005s2435 5.0kb downstream 5.0kb downstream 7425 true scaffold_5: 11561316-11568740 Capsella rubella
Carub.0005s2435 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11561316-11566315 Capsella rubella
Carub.0005s2435 10.0kb upstream 10.0kb upstream 12425 true scaffold_5: 11566316-11578740 Capsella rubella
Carub.0005s2435 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11568741-11578740 Capsella rubella
Carub.0005s2435 10.0kb downstream 10.0kb downstream 12425 true scaffold_5: 11556316-11568740 Capsella rubella
Carub.0005s2435 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11556316-11566315 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361391 5261 Brassicaceae View MSA
123838007 5264 Brassicales-Malvales View MSA
124346929 5266 SBM View MSA
124251426 5268 Malvidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain