Gene : Carub.0005s2489 C. rubella v1.1
Defline:  (1 of 4) PTHR10315//PTHR10315:SF34 - SEVEN IN ABSENTIA HOMOLOG // E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  2489
Name:  ? Carub.0005s2489 Secondary Identifier:  ? PAC:39224305
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2489 0.5kb upstream 0.5kb upstream 3689 true scaffold_5: 11777746-11781434 Capsella rubella
Carub.0005s2489 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11777746-11778245 Capsella rubella
Carub.0005s2489 0.5kb downstream 0.5kb downstream 3689 true scaffold_5: 11778246-11781934 Capsella rubella
Carub.0005s2489 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11781435-11781934 Capsella rubella
Carub.0005s2489 1.0kb upstream 1.0kb upstream 4189 true scaffold_5: 11777246-11781434 Capsella rubella
Carub.0005s2489 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11777246-11778245 Capsella rubella
Carub.0005s2489 1.0kb downstream 1.0kb downstream 4189 true scaffold_5: 11778246-11782434 Capsella rubella
Carub.0005s2489 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11781435-11782434 Capsella rubella
Carub.0005s2489 2.0kb upstream 2.0kb upstream 5189 true scaffold_5: 11776246-11781434 Capsella rubella
Carub.0005s2489 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11776246-11778245 Capsella rubella
Carub.0005s2489 2.0kb downstream 2.0kb downstream 5189 true scaffold_5: 11778246-11783434 Capsella rubella
Carub.0005s2489 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11781435-11783434 Capsella rubella
Carub.0005s2489 5.0kb upstream 5.0kb upstream 8189 true scaffold_5: 11773246-11781434 Capsella rubella
Carub.0005s2489 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11773246-11778245 Capsella rubella
Carub.0005s2489 5.0kb downstream 5.0kb downstream 8189 true scaffold_5: 11778246-11786434 Capsella rubella
Carub.0005s2489 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11781435-11786434 Capsella rubella
Carub.0005s2489 10.0kb upstream 10.0kb upstream 13189 true scaffold_5: 11768246-11781434 Capsella rubella
Carub.0005s2489 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11768246-11778245 Capsella rubella
Carub.0005s2489 10.0kb downstream 10.0kb downstream 13189 true scaffold_5: 11778246-11791434 Capsella rubella
Carub.0005s2489 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11781435-11791434 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370268 5261 Brassicaceae View MSA
123840552 5264 Brassicales-Malvales View MSA
124344674 5266 SBM View MSA
124246222 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain