Gene : Carub.0005s2658 C. rubella v1.1
Defline:  (1 of 5) K01184 - polygalacturonase (E3.2.1.15) Genomic Order:  2658
Name:  ? Carub.0005s2658 Secondary Identifier:  ? PAC:39224009
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2658 0.5kb upstream 0.5kb upstream 2673 true scaffold_5: 12391084-12393756 Capsella rubella
Carub.0005s2658 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 12393257-12393756 Capsella rubella
Carub.0005s2658 0.5kb downstream 0.5kb downstream 2673 true scaffold_5: 12390584-12393256 Capsella rubella
Carub.0005s2658 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 12390584-12391083 Capsella rubella
Carub.0005s2658 1.0kb upstream 1.0kb upstream 3173 true scaffold_5: 12391084-12394256 Capsella rubella
Carub.0005s2658 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 12393257-12394256 Capsella rubella
Carub.0005s2658 1.0kb downstream 1.0kb downstream 3173 true scaffold_5: 12390084-12393256 Capsella rubella
Carub.0005s2658 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 12390084-12391083 Capsella rubella
Carub.0005s2658 2.0kb upstream 2.0kb upstream 4173 true scaffold_5: 12391084-12395256 Capsella rubella
Carub.0005s2658 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 12393257-12395256 Capsella rubella
Carub.0005s2658 2.0kb downstream 2.0kb downstream 4173 true scaffold_5: 12389084-12393256 Capsella rubella
Carub.0005s2658 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 12389084-12391083 Capsella rubella
Carub.0005s2658 5.0kb upstream 5.0kb upstream 7173 true scaffold_5: 12391084-12398256 Capsella rubella
Carub.0005s2658 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 12393257-12398256 Capsella rubella
Carub.0005s2658 5.0kb downstream 5.0kb downstream 7173 true scaffold_5: 12386084-12393256 Capsella rubella
Carub.0005s2658 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 12386084-12391083 Capsella rubella
Carub.0005s2658 10.0kb upstream 10.0kb upstream 12173 true scaffold_5: 12391084-12403256 Capsella rubella
Carub.0005s2658 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 12393257-12403256 Capsella rubella
Carub.0005s2658 10.0kb downstream 10.0kb downstream 12173 true scaffold_5: 12381084-12393256 Capsella rubella
Carub.0005s2658 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 12381084-12391083 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365948 5261 Brassicaceae View MSA
123837359 5264 Brassicales-Malvales View MSA
124322295 5266 SBM View MSA
124252972 5268 Malvidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain