Gene : Carub.0001s4400 C. rubella v1.1
Defline:  (1 of 1) K00167 - 2-oxoisovalerate dehydrogenase E1 component beta subunit (BCKDHB, bkdA2) Genomic Order:  4400
Name:  ? Carub.0001s4400 Secondary Identifier:  ? PAC:39229091
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5046 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4400 0.5kb upstream 0.5kb upstream 2861 true scaffold_1: 19276140-19279000 Capsella rubella
Carub.0001s4400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19276140-19276639 Capsella rubella
Carub.0001s4400 0.5kb downstream 0.5kb downstream 2861 true scaffold_1: 19276640-19279500 Capsella rubella
Carub.0001s4400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19279001-19279500 Capsella rubella
Carub.0001s4400 1.0kb upstream 1.0kb upstream 3361 true scaffold_1: 19275640-19279000 Capsella rubella
Carub.0001s4400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19275640-19276639 Capsella rubella
Carub.0001s4400 1.0kb downstream 1.0kb downstream 3361 true scaffold_1: 19276640-19280000 Capsella rubella
Carub.0001s4400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19279001-19280000 Capsella rubella
Carub.0001s4400 2.0kb upstream 2.0kb upstream 4361 true scaffold_1: 19274640-19279000 Capsella rubella
Carub.0001s4400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19274640-19276639 Capsella rubella
Carub.0001s4400 2.0kb downstream 2.0kb downstream 4361 true scaffold_1: 19276640-19281000 Capsella rubella
Carub.0001s4400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19279001-19281000 Capsella rubella
Carub.0001s4400 5.0kb upstream 5.0kb upstream 7361 true scaffold_1: 19271640-19279000 Capsella rubella
Carub.0001s4400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19271640-19276639 Capsella rubella
Carub.0001s4400 5.0kb downstream 5.0kb downstream 7361 true scaffold_1: 19276640-19284000 Capsella rubella
Carub.0001s4400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19279001-19284000 Capsella rubella
Carub.0001s4400 10.0kb upstream 10.0kb upstream 12361 true scaffold_1: 19266640-19279000 Capsella rubella
Carub.0001s4400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 19266640-19276639 Capsella rubella
Carub.0001s4400 10.0kb downstream 10.0kb downstream 12361 true scaffold_1: 19276640-19289000 Capsella rubella
Carub.0001s4400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19279001-19289000 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377784 5261 Brassicaceae View MSA
123830123 5264 Brassicales-Malvales View MSA
124341245 5266 SBM View MSA
124243640 5268 Malvidae View MSA
124067270 5270 Rosid View MSA
123743874 5271 Pentapetalae View MSA
122787684 5272 Eudicot View MSA
122046166 5273 Angiosperm View MSA
121344271 5274 Embryophyte View MSA
123424966 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain