Gene : Carub.0001s4452 C. rubella v1.1
Defline:  (1 of 3) PTHR23416//PTHR23416:SF56 - SIALIC ACID SYNTHASE-RELATED // SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC-RELATED Genomic Order:  4452
Name:  ? Carub.0001s4452 Secondary Identifier:  ? PAC:39228214
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella CYSTSYN-PWY Capsella rubella pathologic  
Crubella PWY-6936 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4452 0.5kb upstream 0.5kb upstream 1427 true scaffold_1: 19471911-19473337 Capsella rubella
Carub.0001s4452 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19471911-19472410 Capsella rubella
Carub.0001s4452 0.5kb downstream 0.5kb downstream 1427 true scaffold_1: 19472411-19473837 Capsella rubella
Carub.0001s4452 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19473338-19473837 Capsella rubella
Carub.0001s4452 1.0kb upstream 1.0kb upstream 1927 true scaffold_1: 19471411-19473337 Capsella rubella
Carub.0001s4452 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19471411-19472410 Capsella rubella
Carub.0001s4452 1.0kb downstream 1.0kb downstream 1927 true scaffold_1: 19472411-19474337 Capsella rubella
Carub.0001s4452 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19473338-19474337 Capsella rubella
Carub.0001s4452 2.0kb upstream 2.0kb upstream 2927 true scaffold_1: 19470411-19473337 Capsella rubella
Carub.0001s4452 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19470411-19472410 Capsella rubella
Carub.0001s4452 2.0kb downstream 2.0kb downstream 2927 true scaffold_1: 19472411-19475337 Capsella rubella
Carub.0001s4452 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19473338-19475337 Capsella rubella
Carub.0001s4452 5.0kb upstream 5.0kb upstream 5927 true scaffold_1: 19467411-19473337 Capsella rubella
Carub.0001s4452 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19467411-19472410 Capsella rubella
Carub.0001s4452 5.0kb downstream 5.0kb downstream 5927 true scaffold_1: 19472411-19478337 Capsella rubella
Carub.0001s4452 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19473338-19478337 Capsella rubella
Carub.0001s4452 10.0kb upstream 10.0kb upstream 10927 true scaffold_1: 19462411-19473337 Capsella rubella
Carub.0001s4452 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 19462411-19472410 Capsella rubella
Carub.0001s4452 10.0kb downstream 10.0kb downstream 10927 true scaffold_1: 19472411-19483337 Capsella rubella
Carub.0001s4452 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19473338-19483337 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361676 5261 Brassicaceae View MSA
123798221 5264 Brassicales-Malvales View MSA
124295891 5266 SBM View MSA
124148202 5268 Malvidae View MSA
124069334 5270 Rosid View MSA
123751427 5271 Pentapetalae View MSA
122788280 5272 Eudicot View MSA
122045055 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain