Gene : Carub.0001s4476 C. rubella v1.1
Defline:  (1 of 4) K13065 - shikimate O-hydroxycinnamoyltransferase (E2.3.1.133, HCT) Genomic Order:  4476
Name:  ? Carub.0001s4476 Secondary Identifier:  ? PAC:39228369
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-361 Capsella rubella pathologic  
Crubella PWY-6039 Capsella rubella pathologic  
Crubella PWY-6040 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4476 0.5kb upstream 0.5kb upstream 2316 true scaffold_1: 19567557-19569872 Capsella rubella
Carub.0001s4476 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19567557-19568056 Capsella rubella
Carub.0001s4476 0.5kb downstream 0.5kb downstream 2316 true scaffold_1: 19568057-19570372 Capsella rubella
Carub.0001s4476 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19569873-19570372 Capsella rubella
Carub.0001s4476 1.0kb upstream 1.0kb upstream 2816 true scaffold_1: 19567057-19569872 Capsella rubella
Carub.0001s4476 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19567057-19568056 Capsella rubella
Carub.0001s4476 1.0kb downstream 1.0kb downstream 2816 true scaffold_1: 19568057-19570872 Capsella rubella
Carub.0001s4476 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19569873-19570872 Capsella rubella
Carub.0001s4476 2.0kb upstream 2.0kb upstream 3816 true scaffold_1: 19566057-19569872 Capsella rubella
Carub.0001s4476 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19566057-19568056 Capsella rubella
Carub.0001s4476 2.0kb downstream 2.0kb downstream 3816 true scaffold_1: 19568057-19571872 Capsella rubella
Carub.0001s4476 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19569873-19571872 Capsella rubella
Carub.0001s4476 5.0kb upstream 5.0kb upstream 6816 true scaffold_1: 19563057-19569872 Capsella rubella
Carub.0001s4476 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19563057-19568056 Capsella rubella
Carub.0001s4476 5.0kb downstream 5.0kb downstream 6816 true scaffold_1: 19568057-19574872 Capsella rubella
Carub.0001s4476 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19569873-19574872 Capsella rubella
Carub.0001s4476 10.0kb upstream 10.0kb upstream 11816 true scaffold_1: 19558057-19569872 Capsella rubella
Carub.0001s4476 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 19558057-19568056 Capsella rubella
Carub.0001s4476 10.0kb downstream 10.0kb downstream 11816 true scaffold_1: 19568057-19579872 Capsella rubella
Carub.0001s4476 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19569873-19579872 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364979 5261 Brassicaceae View MSA
123837697 5264 Brassicales-Malvales View MSA
124343720 5266 SBM View MSA
124250027 5268 Malvidae View MSA
124074856 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain