Gene : Carub.0001s4483 C. rubella v1.1
Defline:  (1 of 3) 1.1.1.42 - Isocitrate dehydrogenase (NADP(+)) / oxalosuccinate carboxylase Genomic Order:  4483
Name:  ? Carub.0001s4483 Secondary Identifier:  ? PAC:39227797
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6549 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4483 0.5kb upstream 0.5kb upstream 3620 true scaffold_1: 19587745-19591364 Capsella rubella
Carub.0001s4483 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19590865-19591364 Capsella rubella
Carub.0001s4483 0.5kb downstream 0.5kb downstream 3620 true scaffold_1: 19587245-19590864 Capsella rubella
Carub.0001s4483 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19587245-19587744 Capsella rubella
Carub.0001s4483 1.0kb upstream 1.0kb upstream 4120 true scaffold_1: 19587745-19591864 Capsella rubella
Carub.0001s4483 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19590865-19591864 Capsella rubella
Carub.0001s4483 1.0kb downstream 1.0kb downstream 4120 true scaffold_1: 19586745-19590864 Capsella rubella
Carub.0001s4483 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19586745-19587744 Capsella rubella
Carub.0001s4483 2.0kb upstream 2.0kb upstream 5120 true scaffold_1: 19587745-19592864 Capsella rubella
Carub.0001s4483 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19590865-19592864 Capsella rubella
Carub.0001s4483 2.0kb downstream 2.0kb downstream 5120 true scaffold_1: 19585745-19590864 Capsella rubella
Carub.0001s4483 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19585745-19587744 Capsella rubella
Carub.0001s4483 5.0kb upstream 5.0kb upstream 8120 true scaffold_1: 19587745-19595864 Capsella rubella
Carub.0001s4483 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19590865-19595864 Capsella rubella
Carub.0001s4483 5.0kb downstream 5.0kb downstream 8120 true scaffold_1: 19582745-19590864 Capsella rubella
Carub.0001s4483 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19582745-19587744 Capsella rubella
Carub.0001s4483 10.0kb upstream 10.0kb upstream 13120 true scaffold_1: 19587745-19600864 Capsella rubella
Carub.0001s4483 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 19590865-19600864 Capsella rubella
Carub.0001s4483 10.0kb downstream 10.0kb downstream 13120 true scaffold_1: 19577745-19590864 Capsella rubella
Carub.0001s4483 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19577745-19587744 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361976 5261 Brassicaceae View MSA
123836810 5264 Brassicales-Malvales View MSA
124343936 5266 SBM View MSA
124253615 5268 Malvidae View MSA
124070230 5270 Rosid View MSA
123744673 5271 Pentapetalae View MSA
122792686 5272 Eudicot View MSA
122045414 5273 Angiosperm View MSA
121351363 5274 Embryophyte View MSA
123426624 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain