Gene : Carub.0001s4325 C. rubella v1.1
Defline:  (1 of 5) PTHR22835//PTHR22835:SF174 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN // GDSL ESTERASE/LIPASE 1-RELATED Genomic Order:  4325
Name:  ? Carub.0001s4325 Secondary Identifier:  ? PAC:39228615
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6303 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4325 0.5kb upstream 0.5kb upstream 2155 true scaffold_1: 18981286-18983440 Capsella rubella
Carub.0001s4325 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 18981286-18981785 Capsella rubella
Carub.0001s4325 0.5kb downstream 0.5kb downstream 2155 true scaffold_1: 18981786-18983940 Capsella rubella
Carub.0001s4325 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 18983441-18983940 Capsella rubella
Carub.0001s4325 1.0kb upstream 1.0kb upstream 2655 true scaffold_1: 18980786-18983440 Capsella rubella
Carub.0001s4325 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 18980786-18981785 Capsella rubella
Carub.0001s4325 1.0kb downstream 1.0kb downstream 2655 true scaffold_1: 18981786-18984440 Capsella rubella
Carub.0001s4325 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 18983441-18984440 Capsella rubella
Carub.0001s4325 2.0kb upstream 2.0kb upstream 3655 true scaffold_1: 18979786-18983440 Capsella rubella
Carub.0001s4325 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 18979786-18981785 Capsella rubella
Carub.0001s4325 2.0kb downstream 2.0kb downstream 3655 true scaffold_1: 18981786-18985440 Capsella rubella
Carub.0001s4325 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 18983441-18985440 Capsella rubella
Carub.0001s4325 5.0kb upstream 5.0kb upstream 6655 true scaffold_1: 18976786-18983440 Capsella rubella
Carub.0001s4325 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 18976786-18981785 Capsella rubella
Carub.0001s4325 5.0kb downstream 5.0kb downstream 6655 true scaffold_1: 18981786-18988440 Capsella rubella
Carub.0001s4325 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 18983441-18988440 Capsella rubella
Carub.0001s4325 10.0kb upstream 10.0kb upstream 11655 true scaffold_1: 18971786-18983440 Capsella rubella
Carub.0001s4325 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 18971786-18981785 Capsella rubella
Carub.0001s4325 10.0kb downstream 10.0kb downstream 11655 true scaffold_1: 18981786-18993440 Capsella rubella
Carub.0001s4325 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 18983441-18993440 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371746 5261 Brassicaceae View MSA
123841664 5264 Brassicales-Malvales View MSA
124349446 5266 SBM View MSA
124250380 5268 Malvidae View MSA
124074404 5270 Rosid View MSA
123753785 5271 Pentapetalae View MSA
122797352 5272 Eudicot View MSA
122051674 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain