Gene : Carub.0005s2725 C. rubella v1.1
Defline:  (1 of 1) PTHR11941:SF48 - 3-HYDROXYISOBUTYRYL-COA HYDROLASE-LIKE PROTEIN 1, MITOCHONDRIAL Genomic Order:  2725
Name:  ? Carub.0005s2725 Secondary Identifier:  ? PAC:39224221
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7574 Capsella rubella pathologic  
Crubella VALDEG-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2725 0.5kb upstream 0.5kb upstream 3560 true scaffold_5: 12652022-12655581 Capsella rubella
Carub.0005s2725 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 12655082-12655581 Capsella rubella
Carub.0005s2725 0.5kb downstream 0.5kb downstream 3560 true scaffold_5: 12651522-12655081 Capsella rubella
Carub.0005s2725 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 12651522-12652021 Capsella rubella
Carub.0005s2725 1.0kb upstream 1.0kb upstream 4060 true scaffold_5: 12652022-12656081 Capsella rubella
Carub.0005s2725 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 12655082-12656081 Capsella rubella
Carub.0005s2725 1.0kb downstream 1.0kb downstream 4060 true scaffold_5: 12651022-12655081 Capsella rubella
Carub.0005s2725 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 12651022-12652021 Capsella rubella
Carub.0005s2725 2.0kb upstream 2.0kb upstream 5060 true scaffold_5: 12652022-12657081 Capsella rubella
Carub.0005s2725 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 12655082-12657081 Capsella rubella
Carub.0005s2725 2.0kb downstream 2.0kb downstream 5060 true scaffold_5: 12650022-12655081 Capsella rubella
Carub.0005s2725 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 12650022-12652021 Capsella rubella
Carub.0005s2725 5.0kb upstream 5.0kb upstream 8060 true scaffold_5: 12652022-12660081 Capsella rubella
Carub.0005s2725 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 12655082-12660081 Capsella rubella
Carub.0005s2725 5.0kb downstream 5.0kb downstream 8060 true scaffold_5: 12647022-12655081 Capsella rubella
Carub.0005s2725 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 12647022-12652021 Capsella rubella
Carub.0005s2725 10.0kb upstream 10.0kb upstream 13060 true scaffold_5: 12652022-12665081 Capsella rubella
Carub.0005s2725 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 12655082-12665081 Capsella rubella
Carub.0005s2725 10.0kb downstream 10.0kb downstream 13060 true scaffold_5: 12642022-12655081 Capsella rubella
Carub.0005s2725 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 12642022-12652021 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372333 5261 Brassicaceae View MSA
123827340 5264 Brassicales-Malvales View MSA
124337150 5266 SBM View MSA
124239754 5268 Malvidae View MSA
124065753 5270 Rosid View MSA
123742938 5271 Pentapetalae View MSA
122794700 5272 Eudicot View MSA
122041951 5273 Angiosperm View MSA
121350478 5274 Embryophyte View MSA
123428448 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain