Gene : Carub.0001s3731 C. rubella v1.1
Defline:  (1 of 4) K13065 - shikimate O-hydroxycinnamoyltransferase (E2.3.1.133, HCT) Genomic Order:  3731
Name:  ? Carub.0001s3731 Secondary Identifier:  ? PAC:39230333
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-361 Capsella rubella pathologic  
Crubella PWY-6039 Capsella rubella pathologic  
Crubella PWY-6040 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3731 0.5kb upstream 0.5kb upstream 2128 true scaffold_1: 16448051-16450178 Capsella rubella
Carub.0001s3731 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 16449679-16450178 Capsella rubella
Carub.0001s3731 0.5kb downstream 0.5kb downstream 2128 true scaffold_1: 16447551-16449678 Capsella rubella
Carub.0001s3731 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 16447551-16448050 Capsella rubella
Carub.0001s3731 1.0kb upstream 1.0kb upstream 2628 true scaffold_1: 16448051-16450678 Capsella rubella
Carub.0001s3731 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 16449679-16450678 Capsella rubella
Carub.0001s3731 1.0kb downstream 1.0kb downstream 2628 true scaffold_1: 16447051-16449678 Capsella rubella
Carub.0001s3731 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 16447051-16448050 Capsella rubella
Carub.0001s3731 2.0kb upstream 2.0kb upstream 3628 true scaffold_1: 16448051-16451678 Capsella rubella
Carub.0001s3731 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 16449679-16451678 Capsella rubella
Carub.0001s3731 2.0kb downstream 2.0kb downstream 3628 true scaffold_1: 16446051-16449678 Capsella rubella
Carub.0001s3731 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 16446051-16448050 Capsella rubella
Carub.0001s3731 5.0kb upstream 5.0kb upstream 6628 true scaffold_1: 16448051-16454678 Capsella rubella
Carub.0001s3731 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 16449679-16454678 Capsella rubella
Carub.0001s3731 5.0kb downstream 5.0kb downstream 6628 true scaffold_1: 16443051-16449678 Capsella rubella
Carub.0001s3731 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 16443051-16448050 Capsella rubella
Carub.0001s3731 10.0kb upstream 10.0kb upstream 11628 true scaffold_1: 16448051-16459678 Capsella rubella
Carub.0001s3731 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 16449679-16459678 Capsella rubella
Carub.0001s3731 10.0kb downstream 10.0kb downstream 11628 true scaffold_1: 16438051-16449678 Capsella rubella
Carub.0001s3731 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 16438051-16448050 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122335208 5261 Brassicaceae Singleton cluster - no MSA
123775990 5264 Brassicales-Malvales Singleton cluster - no MSA
124274388 5266 SBM Singleton cluster - no MSA
124256525 5268 Malvidae View MSA
124075524 5270 Rosid View MSA
123745405 5271 Pentapetalae View MSA
122795422 5272 Eudicot View MSA
122051149 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain