Gene : Carub.0005s2537 C. rubella v1.1
Defline:  (1 of 1) 1.1.1.86 - Ketol-acid reductoisomerase (NADP(+)) / Dihydroxyisovalerate dehydrogenase (isomerizing) Genomic Order:  2537
Name:  ? Carub.0005s2537 Secondary Identifier:  ? PAC:39226794
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella BRANCHED-CHAIN-AA-SYN-PWY Capsella rubella pathologic  
Crubella ILEUSYN-PWY Capsella rubella pathologic  
Crubella PWY-3001 Capsella rubella pathologic  
Crubella VALSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2537 0.5kb upstream 0.5kb upstream 3548 true scaffold_5: 11945063-11948610 Capsella rubella
Carub.0005s2537 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11945063-11945562 Capsella rubella
Carub.0005s2537 0.5kb downstream 0.5kb downstream 3548 true scaffold_5: 11945563-11949110 Capsella rubella
Carub.0005s2537 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11948611-11949110 Capsella rubella
Carub.0005s2537 1.0kb upstream 1.0kb upstream 4048 true scaffold_5: 11944563-11948610 Capsella rubella
Carub.0005s2537 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11944563-11945562 Capsella rubella
Carub.0005s2537 1.0kb downstream 1.0kb downstream 4048 true scaffold_5: 11945563-11949610 Capsella rubella
Carub.0005s2537 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11948611-11949610 Capsella rubella
Carub.0005s2537 2.0kb upstream 2.0kb upstream 5048 true scaffold_5: 11943563-11948610 Capsella rubella
Carub.0005s2537 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11943563-11945562 Capsella rubella
Carub.0005s2537 2.0kb downstream 2.0kb downstream 5048 true scaffold_5: 11945563-11950610 Capsella rubella
Carub.0005s2537 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11948611-11950610 Capsella rubella
Carub.0005s2537 5.0kb upstream 5.0kb upstream 8048 true scaffold_5: 11940563-11948610 Capsella rubella
Carub.0005s2537 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11940563-11945562 Capsella rubella
Carub.0005s2537 5.0kb downstream 5.0kb downstream 8048 true scaffold_5: 11945563-11953610 Capsella rubella
Carub.0005s2537 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11948611-11953610 Capsella rubella
Carub.0005s2537 10.0kb upstream 10.0kb upstream 13048 true scaffold_5: 11935563-11948610 Capsella rubella
Carub.0005s2537 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11935563-11945562 Capsella rubella
Carub.0005s2537 10.0kb downstream 10.0kb downstream 13048 true scaffold_5: 11945563-11958610 Capsella rubella
Carub.0005s2537 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11948611-11958610 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368423 5261 Brassicaceae View MSA
123828492 5264 Brassicales-Malvales View MSA
124339638 5266 SBM View MSA
124249053 5268 Malvidae View MSA
124060504 5270 Rosid View MSA
123749649 5271 Pentapetalae View MSA
122794973 5272 Eudicot View MSA
122043531 5273 Angiosperm View MSA
121344443 5274 Embryophyte View MSA
123428276 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain