Gene : Carub.0001s2571 C. rubella v1.1
Defline:  (1 of 1) PTHR24322//PTHR24322:SF619 - FAMILY NOT NAMED // 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, CHLOROPLASTIC Genomic Order:  2571
Name:  ? Carub.0001s2571 Secondary Identifier:  ? PAC:39229541
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella FASYN-ELONG-PWY Capsella rubella pathologic  
Crubella PWY-5156 Capsella rubella pathologic  
Crubella PWY-5971 Capsella rubella pathologic  
Crubella PWY-5973 Capsella rubella pathologic  
Crubella PWY-5989 Capsella rubella pathologic  
Crubella PWY-6282 Capsella rubella pathologic  
Crubella PWY-7388 Capsella rubella pathologic  
Crubella PWY-7663 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2571 0.5kb upstream 0.5kb upstream 3057 true scaffold_1: 9270111-9273167 Capsella rubella
Carub.0001s2571 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9272668-9273167 Capsella rubella
Carub.0001s2571 0.5kb downstream 0.5kb downstream 3057 true scaffold_1: 9269611-9272667 Capsella rubella
Carub.0001s2571 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9269611-9270110 Capsella rubella
Carub.0001s2571 1.0kb upstream 1.0kb upstream 3557 true scaffold_1: 9270111-9273667 Capsella rubella
Carub.0001s2571 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9272668-9273667 Capsella rubella
Carub.0001s2571 1.0kb downstream 1.0kb downstream 3557 true scaffold_1: 9269111-9272667 Capsella rubella
Carub.0001s2571 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9269111-9270110 Capsella rubella
Carub.0001s2571 2.0kb upstream 2.0kb upstream 4557 true scaffold_1: 9270111-9274667 Capsella rubella
Carub.0001s2571 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9272668-9274667 Capsella rubella
Carub.0001s2571 2.0kb downstream 2.0kb downstream 4557 true scaffold_1: 9268111-9272667 Capsella rubella
Carub.0001s2571 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9268111-9270110 Capsella rubella
Carub.0001s2571 5.0kb upstream 5.0kb upstream 7557 true scaffold_1: 9270111-9277667 Capsella rubella
Carub.0001s2571 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9272668-9277667 Capsella rubella
Carub.0001s2571 5.0kb downstream 5.0kb downstream 7557 true scaffold_1: 9265111-9272667 Capsella rubella
Carub.0001s2571 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9265111-9270110 Capsella rubella
Carub.0001s2571 10.0kb upstream 10.0kb upstream 12557 true scaffold_1: 9270111-9282667 Capsella rubella
Carub.0001s2571 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9272668-9282667 Capsella rubella
Carub.0001s2571 10.0kb downstream 10.0kb downstream 12557 true scaffold_1: 9260111-9272667 Capsella rubella
Carub.0001s2571 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9260111-9270110 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371624 5261 Brassicaceae View MSA
123829901 5264 Brassicales-Malvales View MSA
124338010 5266 SBM View MSA
124239071 5268 Malvidae View MSA
124071251 5270 Rosid View MSA
123740776 5271 Pentapetalae View MSA
122787296 5272 Eudicot View MSA
122042809 5273 Angiosperm View MSA
121347149 5274 Embryophyte View MSA
123428494 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain