Gene : Carub.0001s2599 C. rubella v1.1
Defline:  (1 of 1) PTHR11062//PTHR11062:SF105 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // BETA-1,4-XYLOSYLTRANSFERASE IRX10-RELATED Genomic Order:  2599
Name:  ? Carub.0001s2599 Secondary Identifier:  ? PAC:39228185
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5980 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2599 0.5kb upstream 0.5kb upstream 2821 true scaffold_1: 9370430-9373250 Capsella rubella
Carub.0001s2599 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9372751-9373250 Capsella rubella
Carub.0001s2599 0.5kb downstream 0.5kb downstream 2821 true scaffold_1: 9369930-9372750 Capsella rubella
Carub.0001s2599 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9369930-9370429 Capsella rubella
Carub.0001s2599 1.0kb upstream 1.0kb upstream 3321 true scaffold_1: 9370430-9373750 Capsella rubella
Carub.0001s2599 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9372751-9373750 Capsella rubella
Carub.0001s2599 1.0kb downstream 1.0kb downstream 3321 true scaffold_1: 9369430-9372750 Capsella rubella
Carub.0001s2599 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9369430-9370429 Capsella rubella
Carub.0001s2599 2.0kb upstream 2.0kb upstream 4321 true scaffold_1: 9370430-9374750 Capsella rubella
Carub.0001s2599 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9372751-9374750 Capsella rubella
Carub.0001s2599 2.0kb downstream 2.0kb downstream 4321 true scaffold_1: 9368430-9372750 Capsella rubella
Carub.0001s2599 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9368430-9370429 Capsella rubella
Carub.0001s2599 5.0kb upstream 5.0kb upstream 7321 true scaffold_1: 9370430-9377750 Capsella rubella
Carub.0001s2599 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9372751-9377750 Capsella rubella
Carub.0001s2599 5.0kb downstream 5.0kb downstream 7321 true scaffold_1: 9365430-9372750 Capsella rubella
Carub.0001s2599 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9365430-9370429 Capsella rubella
Carub.0001s2599 10.0kb upstream 10.0kb upstream 12321 true scaffold_1: 9370430-9382750 Capsella rubella
Carub.0001s2599 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9372751-9382750 Capsella rubella
Carub.0001s2599 10.0kb downstream 10.0kb downstream 12321 true scaffold_1: 9360430-9372750 Capsella rubella
Carub.0001s2599 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9360430-9370429 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377800 5261 Brassicaceae View MSA
123828573 5264 Brassicales-Malvales View MSA
124337730 5266 SBM View MSA
124244464 5268 Malvidae View MSA
124072304 5270 Rosid View MSA
123741163 5271 Pentapetalae View MSA
122792713 5272 Eudicot View MSA
122045479 5273 Angiosperm View MSA
121345748 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain