Gene : Carub.0001s2618 C. rubella v1.1
Defline:  (1 of 1) PTHR22572//PTHR22572:SF110 - SUGAR-1-PHOSPHATE GUANYL TRANSFERASE // GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 2, CHLOROPLASTIC Genomic Order:  2618
Name:  ? Carub.0001s2618 Secondary Identifier:  ? PAC:39226978
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLYCOGENSYNTH-PWY Capsella rubella pathologic  
Crubella PWY-622 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2618 0.5kb upstream 0.5kb upstream 3808 true scaffold_1: 9462023-9465830 Capsella rubella
Carub.0001s2618 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9462023-9462522 Capsella rubella
Carub.0001s2618 0.5kb downstream 0.5kb downstream 3808 true scaffold_1: 9462523-9466330 Capsella rubella
Carub.0001s2618 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9465831-9466330 Capsella rubella
Carub.0001s2618 1.0kb upstream 1.0kb upstream 4308 true scaffold_1: 9461523-9465830 Capsella rubella
Carub.0001s2618 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9461523-9462522 Capsella rubella
Carub.0001s2618 1.0kb downstream 1.0kb downstream 4308 true scaffold_1: 9462523-9466830 Capsella rubella
Carub.0001s2618 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9465831-9466830 Capsella rubella
Carub.0001s2618 2.0kb upstream 2.0kb upstream 5308 true scaffold_1: 9460523-9465830 Capsella rubella
Carub.0001s2618 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9460523-9462522 Capsella rubella
Carub.0001s2618 2.0kb downstream 2.0kb downstream 5308 true scaffold_1: 9462523-9467830 Capsella rubella
Carub.0001s2618 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9465831-9467830 Capsella rubella
Carub.0001s2618 5.0kb upstream 5.0kb upstream 8308 true scaffold_1: 9457523-9465830 Capsella rubella
Carub.0001s2618 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9457523-9462522 Capsella rubella
Carub.0001s2618 5.0kb downstream 5.0kb downstream 8308 true scaffold_1: 9462523-9470830 Capsella rubella
Carub.0001s2618 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9465831-9470830 Capsella rubella
Carub.0001s2618 10.0kb upstream 10.0kb upstream 13308 true scaffold_1: 9452523-9465830 Capsella rubella
Carub.0001s2618 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9452523-9462522 Capsella rubella
Carub.0001s2618 10.0kb downstream 10.0kb downstream 13308 true scaffold_1: 9462523-9475830 Capsella rubella
Carub.0001s2618 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9465831-9475830 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373586 5261 Brassicaceae View MSA
123828837 5264 Brassicales-Malvales View MSA
124336634 5266 SBM View MSA
124245474 5268 Malvidae View MSA
124063067 5270 Rosid View MSA
123736648 5271 Pentapetalae View MSA
122795851 5272 Eudicot View MSA
122049948 5273 Angiosperm View MSA
121348030 5274 Embryophyte View MSA
123424085 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain