Gene : Carub.0001s2332 C. rubella v1.1
Defline:  (1 of 3) K00797 - spermidine synthase (speE, SRM) Genomic Order:  2332
Name:  ? Carub.0001s2332 Secondary Identifier:  ? PAC:39231240
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella BSUBPOLYAMSYN-PWY Capsella rubella pathologic  
Crubella PWY-7528 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2332 0.5kb upstream 0.5kb upstream 3063 true scaffold_1: 8383107-8386169 Capsella rubella
Carub.0001s2332 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8383107-8383606 Capsella rubella
Carub.0001s2332 0.5kb downstream 0.5kb downstream 3063 true scaffold_1: 8383607-8386669 Capsella rubella
Carub.0001s2332 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8386170-8386669 Capsella rubella
Carub.0001s2332 1.0kb upstream 1.0kb upstream 3563 true scaffold_1: 8382607-8386169 Capsella rubella
Carub.0001s2332 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8382607-8383606 Capsella rubella
Carub.0001s2332 1.0kb downstream 1.0kb downstream 3563 true scaffold_1: 8383607-8387169 Capsella rubella
Carub.0001s2332 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8386170-8387169 Capsella rubella
Carub.0001s2332 2.0kb upstream 2.0kb upstream 4563 true scaffold_1: 8381607-8386169 Capsella rubella
Carub.0001s2332 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8381607-8383606 Capsella rubella
Carub.0001s2332 2.0kb downstream 2.0kb downstream 4563 true scaffold_1: 8383607-8388169 Capsella rubella
Carub.0001s2332 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8386170-8388169 Capsella rubella
Carub.0001s2332 5.0kb upstream 5.0kb upstream 7563 true scaffold_1: 8378607-8386169 Capsella rubella
Carub.0001s2332 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8378607-8383606 Capsella rubella
Carub.0001s2332 5.0kb downstream 5.0kb downstream 7563 true scaffold_1: 8383607-8391169 Capsella rubella
Carub.0001s2332 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8386170-8391169 Capsella rubella
Carub.0001s2332 10.0kb upstream 10.0kb upstream 12563 true scaffold_1: 8373607-8386169 Capsella rubella
Carub.0001s2332 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8373607-8383606 Capsella rubella
Carub.0001s2332 10.0kb downstream 10.0kb downstream 12563 true scaffold_1: 8383607-8396169 Capsella rubella
Carub.0001s2332 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8386170-8396169 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374349 5261 Brassicaceae View MSA
123837275 5264 Brassicales-Malvales View MSA
124342552 5266 SBM View MSA
124246037 5268 Malvidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain