Gene : Carub.0005s2960 C. rubella v1.1
Defline:  (1 of 1) PTHR10168//PTHR10168:SF118 - GLUTAREDOXIN // GLUTAREDOXIN-C11-RELATED Genomic Order:  2960
Name:  ? Carub.0005s2960 Secondary Identifier:  ? PAC:39225301
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella THIOREDOX-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2960 0.5kb upstream 0.5kb upstream 812 true scaffold_5: 13509448-13510259 Capsella rubella
Carub.0005s2960 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 13509448-13509947 Capsella rubella
Carub.0005s2960 0.5kb downstream 0.5kb downstream 812 true scaffold_5: 13509948-13510759 Capsella rubella
Carub.0005s2960 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 13510260-13510759 Capsella rubella
Carub.0005s2960 1.0kb upstream 1.0kb upstream 1312 true scaffold_5: 13508948-13510259 Capsella rubella
Carub.0005s2960 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 13508948-13509947 Capsella rubella
Carub.0005s2960 1.0kb downstream 1.0kb downstream 1312 true scaffold_5: 13509948-13511259 Capsella rubella
Carub.0005s2960 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 13510260-13511259 Capsella rubella
Carub.0005s2960 2.0kb upstream 2.0kb upstream 2312 true scaffold_5: 13507948-13510259 Capsella rubella
Carub.0005s2960 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 13507948-13509947 Capsella rubella
Carub.0005s2960 2.0kb downstream 2.0kb downstream 2312 true scaffold_5: 13509948-13512259 Capsella rubella
Carub.0005s2960 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 13510260-13512259 Capsella rubella
Carub.0005s2960 5.0kb upstream 5.0kb upstream 5312 true scaffold_5: 13504948-13510259 Capsella rubella
Carub.0005s2960 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 13504948-13509947 Capsella rubella
Carub.0005s2960 5.0kb downstream 5.0kb downstream 5312 true scaffold_5: 13509948-13515259 Capsella rubella
Carub.0005s2960 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 13510260-13515259 Capsella rubella
Carub.0005s2960 10.0kb upstream 10.0kb upstream 10312 true scaffold_5: 13499948-13510259 Capsella rubella
Carub.0005s2960 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 13499948-13509947 Capsella rubella
Carub.0005s2960 10.0kb downstream 10.0kb downstream 10312 true scaffold_5: 13509948-13520259 Capsella rubella
Carub.0005s2960 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 13510260-13520259 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373515 5261 Brassicaceae View MSA
123836774 5264 Brassicales-Malvales View MSA
124350155 5266 SBM View MSA
124244333 5268 Malvidae View MSA
124063697 5270 Rosid View MSA
123752852 5271 Pentapetalae View MSA
122796200 5272 Eudicot View MSA
122047042 5273 Angiosperm View MSA
121349593 5274 Embryophyte View MSA
123381368 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain