Gene : Carub.0001s1718 C. rubella v1.1
Defline:  (1 of 2) PTHR11771//PTHR11771:SF38 - LIPOXYGENASE // LIPOXYGENASE 3, CHLOROPLASTIC-RELATED Genomic Order:  1718
Name:  ? Carub.0001s1718 Secondary Identifier:  ? PAC:39227079
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5409 Capsella rubella pathologic  
Crubella PWY-5410 Capsella rubella pathologic  
Crubella PWY-735 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1718 0.5kb upstream 0.5kb upstream 4649 true scaffold_1: 6023131-6027779 Capsella rubella
Carub.0001s1718 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6023131-6023630 Capsella rubella
Carub.0001s1718 0.5kb downstream 0.5kb downstream 4649 true scaffold_1: 6023631-6028279 Capsella rubella
Carub.0001s1718 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6027780-6028279 Capsella rubella
Carub.0001s1718 1.0kb upstream 1.0kb upstream 5149 true scaffold_1: 6022631-6027779 Capsella rubella
Carub.0001s1718 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6022631-6023630 Capsella rubella
Carub.0001s1718 1.0kb downstream 1.0kb downstream 5149 true scaffold_1: 6023631-6028779 Capsella rubella
Carub.0001s1718 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6027780-6028779 Capsella rubella
Carub.0001s1718 2.0kb upstream 2.0kb upstream 6149 true scaffold_1: 6021631-6027779 Capsella rubella
Carub.0001s1718 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6021631-6023630 Capsella rubella
Carub.0001s1718 2.0kb downstream 2.0kb downstream 6149 true scaffold_1: 6023631-6029779 Capsella rubella
Carub.0001s1718 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6027780-6029779 Capsella rubella
Carub.0001s1718 5.0kb upstream 5.0kb upstream 9149 true scaffold_1: 6018631-6027779 Capsella rubella
Carub.0001s1718 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6018631-6023630 Capsella rubella
Carub.0001s1718 5.0kb downstream 5.0kb downstream 9149 true scaffold_1: 6023631-6032779 Capsella rubella
Carub.0001s1718 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6027780-6032779 Capsella rubella
Carub.0001s1718 10.0kb upstream 10.0kb upstream 14149 true scaffold_1: 6013631-6027779 Capsella rubella
Carub.0001s1718 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6013631-6023630 Capsella rubella
Carub.0001s1718 10.0kb downstream 10.0kb downstream 14149 true scaffold_1: 6023631-6037779 Capsella rubella
Carub.0001s1718 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6027780-6037779 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372278 5261 Brassicaceae View MSA
123836970 5264 Brassicales-Malvales View MSA
124344958 5266 SBM View MSA
124254155 5268 Malvidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain