Gene : Carub.0001s1643 C. rubella v1.1
Defline:  (1 of 2) K03941 - NADH dehydrogenase (ubiquinone) Fe-S protein 8 (NDUFS8) Genomic Order:  1643
Name:  ? Carub.0001s1643 Secondary Identifier:  ? PAC:39231493
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-3781 Capsella rubella pathologic  
Crubella PWY-4302 Capsella rubella pathologic  
Crubella PWY-5083 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1643 0.5kb upstream 0.5kb upstream 2732 true scaffold_1: 5771500-5774231 Capsella rubella
Carub.0001s1643 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5771500-5771999 Capsella rubella
Carub.0001s1643 0.5kb downstream 0.5kb downstream 2732 true scaffold_1: 5772000-5774731 Capsella rubella
Carub.0001s1643 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5774232-5774731 Capsella rubella
Carub.0001s1643 1.0kb upstream 1.0kb upstream 3232 true scaffold_1: 5771000-5774231 Capsella rubella
Carub.0001s1643 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5771000-5771999 Capsella rubella
Carub.0001s1643 1.0kb downstream 1.0kb downstream 3232 true scaffold_1: 5772000-5775231 Capsella rubella
Carub.0001s1643 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5774232-5775231 Capsella rubella
Carub.0001s1643 2.0kb upstream 2.0kb upstream 4232 true scaffold_1: 5770000-5774231 Capsella rubella
Carub.0001s1643 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5770000-5771999 Capsella rubella
Carub.0001s1643 2.0kb downstream 2.0kb downstream 4232 true scaffold_1: 5772000-5776231 Capsella rubella
Carub.0001s1643 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5774232-5776231 Capsella rubella
Carub.0001s1643 5.0kb upstream 5.0kb upstream 7232 true scaffold_1: 5767000-5774231 Capsella rubella
Carub.0001s1643 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5767000-5771999 Capsella rubella
Carub.0001s1643 5.0kb downstream 5.0kb downstream 7232 true scaffold_1: 5772000-5779231 Capsella rubella
Carub.0001s1643 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5774232-5779231 Capsella rubella
Carub.0001s1643 10.0kb upstream 10.0kb upstream 12232 true scaffold_1: 5762000-5774231 Capsella rubella
Carub.0001s1643 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5762000-5771999 Capsella rubella
Carub.0001s1643 10.0kb downstream 10.0kb downstream 12232 true scaffold_1: 5772000-5784231 Capsella rubella
Carub.0001s1643 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5774232-5784231 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374782 5261 Brassicaceae View MSA
123838617 5264 Brassicales-Malvales View MSA
124351527 5266 SBM View MSA
124241017 5268 Malvidae View MSA
124064597 5270 Rosid View MSA
123744244 5271 Pentapetalae View MSA
122789231 5272 Eudicot View MSA
122050387 5273 Angiosperm View MSA
121349210 5274 Embryophyte View MSA
123424843 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain