Gene : Carub.0001s1604 C. rubella v1.1
Defline:  (1 of 3) K00134 - glyceraldehyde 3-phosphate dehydrogenase (GAPDH, gapA) Genomic Order:  1604
Name:  ? Carub.0001s1604 Secondary Identifier:  ? PAC:39227767
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1604 0.5kb upstream 0.5kb upstream 3826 true scaffold_1: 5632682-5636507 Capsella rubella
Carub.0001s1604 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5632682-5633181 Capsella rubella
Carub.0001s1604 0.5kb downstream 0.5kb downstream 3826 true scaffold_1: 5633182-5637007 Capsella rubella
Carub.0001s1604 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5636508-5637007 Capsella rubella
Carub.0001s1604 1.0kb upstream 1.0kb upstream 4326 true scaffold_1: 5632182-5636507 Capsella rubella
Carub.0001s1604 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5632182-5633181 Capsella rubella
Carub.0001s1604 1.0kb downstream 1.0kb downstream 4326 true scaffold_1: 5633182-5637507 Capsella rubella
Carub.0001s1604 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5636508-5637507 Capsella rubella
Carub.0001s1604 2.0kb upstream 2.0kb upstream 5326 true scaffold_1: 5631182-5636507 Capsella rubella
Carub.0001s1604 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5631182-5633181 Capsella rubella
Carub.0001s1604 2.0kb downstream 2.0kb downstream 5326 true scaffold_1: 5633182-5638507 Capsella rubella
Carub.0001s1604 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5636508-5638507 Capsella rubella
Carub.0001s1604 5.0kb upstream 5.0kb upstream 8326 true scaffold_1: 5628182-5636507 Capsella rubella
Carub.0001s1604 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5628182-5633181 Capsella rubella
Carub.0001s1604 5.0kb downstream 5.0kb downstream 8326 true scaffold_1: 5633182-5641507 Capsella rubella
Carub.0001s1604 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5636508-5641507 Capsella rubella
Carub.0001s1604 10.0kb upstream 10.0kb upstream 13326 true scaffold_1: 5623182-5636507 Capsella rubella
Carub.0001s1604 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5623182-5633181 Capsella rubella
Carub.0001s1604 10.0kb downstream 10.0kb downstream 13326 true scaffold_1: 5633182-5646507 Capsella rubella
Carub.0001s1604 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5636508-5646507 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374998 5261 Brassicaceae View MSA
123836882 5264 Brassicales-Malvales View MSA
124346127 5266 SBM View MSA
124243370 5268 Malvidae View MSA
124063810 5270 Rosid View MSA
123738168 5271 Pentapetalae View MSA
122792653 5272 Eudicot View MSA
122042179 5273 Angiosperm View MSA
121345581 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain