Gene : Carub.0001s3898 C. rubella v1.1
Defline:  (1 of 5) PTHR22849//PTHR22849:SF52 - WDSAM1 PROTEIN // E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  3898
Name:  ? Carub.0001s3898 Secondary Identifier:  ? PAC:39229614
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3898 0.5kb upstream 0.5kb upstream 2104 true scaffold_1: 17174495-17176598 Capsella rubella
Carub.0001s3898 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 17176099-17176598 Capsella rubella
Carub.0001s3898 0.5kb downstream 0.5kb downstream 2104 true scaffold_1: 17173995-17176098 Capsella rubella
Carub.0001s3898 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 17173995-17174494 Capsella rubella
Carub.0001s3898 1.0kb upstream 1.0kb upstream 2604 true scaffold_1: 17174495-17177098 Capsella rubella
Carub.0001s3898 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 17176099-17177098 Capsella rubella
Carub.0001s3898 1.0kb downstream 1.0kb downstream 2604 true scaffold_1: 17173495-17176098 Capsella rubella
Carub.0001s3898 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 17173495-17174494 Capsella rubella
Carub.0001s3898 2.0kb upstream 2.0kb upstream 3604 true scaffold_1: 17174495-17178098 Capsella rubella
Carub.0001s3898 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 17176099-17178098 Capsella rubella
Carub.0001s3898 2.0kb downstream 2.0kb downstream 3604 true scaffold_1: 17172495-17176098 Capsella rubella
Carub.0001s3898 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 17172495-17174494 Capsella rubella
Carub.0001s3898 5.0kb upstream 5.0kb upstream 6604 true scaffold_1: 17174495-17181098 Capsella rubella
Carub.0001s3898 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 17176099-17181098 Capsella rubella
Carub.0001s3898 5.0kb downstream 5.0kb downstream 6604 true scaffold_1: 17169495-17176098 Capsella rubella
Carub.0001s3898 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 17169495-17174494 Capsella rubella
Carub.0001s3898 10.0kb upstream 10.0kb upstream 11604 true scaffold_1: 17174495-17186098 Capsella rubella
Carub.0001s3898 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 17176099-17186098 Capsella rubella
Carub.0001s3898 10.0kb downstream 10.0kb downstream 11604 true scaffold_1: 17164495-17176098 Capsella rubella
Carub.0001s3898 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 17164495-17174494 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369304 5261 Brassicaceae View MSA
123836099 5264 Brassicales-Malvales View MSA
124342349 5266 SBM View MSA
124246737 5268 Malvidae View MSA
124065727 5270 Rosid View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain