Gene : Carub.0001s3928 C. rubella v1.1
Defline:  (1 of 3) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase Genomic Order:  3928
Name:  ? Carub.0001s3928 Secondary Identifier:  ? PAC:39229975
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3928 0.5kb upstream 0.5kb upstream 6211 true scaffold_1: 17297694-17303904 Capsella rubella
Carub.0001s3928 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 17297694-17298193 Capsella rubella
Carub.0001s3928 0.5kb downstream 0.5kb downstream 6211 true scaffold_1: 17298194-17304404 Capsella rubella
Carub.0001s3928 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 17303905-17304404 Capsella rubella
Carub.0001s3928 1.0kb upstream 1.0kb upstream 6711 true scaffold_1: 17297194-17303904 Capsella rubella
Carub.0001s3928 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 17297194-17298193 Capsella rubella
Carub.0001s3928 1.0kb downstream 1.0kb downstream 6711 true scaffold_1: 17298194-17304904 Capsella rubella
Carub.0001s3928 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 17303905-17304904 Capsella rubella
Carub.0001s3928 2.0kb upstream 2.0kb upstream 7711 true scaffold_1: 17296194-17303904 Capsella rubella
Carub.0001s3928 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 17296194-17298193 Capsella rubella
Carub.0001s3928 2.0kb downstream 2.0kb downstream 7711 true scaffold_1: 17298194-17305904 Capsella rubella
Carub.0001s3928 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 17303905-17305904 Capsella rubella
Carub.0001s3928 5.0kb upstream 5.0kb upstream 10711 true scaffold_1: 17293194-17303904 Capsella rubella
Carub.0001s3928 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 17293194-17298193 Capsella rubella
Carub.0001s3928 5.0kb downstream 5.0kb downstream 10711 true scaffold_1: 17298194-17308904 Capsella rubella
Carub.0001s3928 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 17303905-17308904 Capsella rubella
Carub.0001s3928 10.0kb upstream 10.0kb upstream 15711 true scaffold_1: 17288194-17303904 Capsella rubella
Carub.0001s3928 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 17288194-17298193 Capsella rubella
Carub.0001s3928 10.0kb downstream 10.0kb downstream 15711 true scaffold_1: 17298194-17313904 Capsella rubella
Carub.0001s3928 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 17303905-17313904 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122337492 5261 Brassicaceae View MSA
123778141 5264 Brassicales-Malvales View MSA
124276493 5266 SBM View MSA
124131767 5268 Malvidae View MSA
124066090 5270 Rosid View MSA
123749882 5271 Pentapetalae View MSA
122789988 5272 Eudicot View MSA
122047618 5273 Angiosperm View MSA
121344832 5274 Embryophyte View MSA
123424388 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain