Gene : Carub.0001s3336 C. rubella v1.1
Defline:  (1 of 12) K06689 - ubiquitin-conjugating enzyme E2 D/E (UBE2D_E, UBC4, UBC5) Genomic Order:  3336
Name:  ? Carub.0001s3336 Secondary Identifier:  ? PAC:39227741
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3336 0.5kb upstream 0.5kb upstream 1933 true scaffold_1: 12729318-12731250 Capsella rubella
Carub.0001s3336 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 12729318-12729817 Capsella rubella
Carub.0001s3336 0.5kb downstream 0.5kb downstream 1933 true scaffold_1: 12729818-12731750 Capsella rubella
Carub.0001s3336 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 12731251-12731750 Capsella rubella
Carub.0001s3336 1.0kb upstream 1.0kb upstream 2433 true scaffold_1: 12728818-12731250 Capsella rubella
Carub.0001s3336 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 12728818-12729817 Capsella rubella
Carub.0001s3336 1.0kb downstream 1.0kb downstream 2433 true scaffold_1: 12729818-12732250 Capsella rubella
Carub.0001s3336 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 12731251-12732250 Capsella rubella
Carub.0001s3336 2.0kb upstream 2.0kb upstream 3433 true scaffold_1: 12727818-12731250 Capsella rubella
Carub.0001s3336 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 12727818-12729817 Capsella rubella
Carub.0001s3336 2.0kb downstream 2.0kb downstream 3433 true scaffold_1: 12729818-12733250 Capsella rubella
Carub.0001s3336 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 12731251-12733250 Capsella rubella
Carub.0001s3336 5.0kb upstream 5.0kb upstream 6433 true scaffold_1: 12724818-12731250 Capsella rubella
Carub.0001s3336 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 12724818-12729817 Capsella rubella
Carub.0001s3336 5.0kb downstream 5.0kb downstream 6433 true scaffold_1: 12729818-12736250 Capsella rubella
Carub.0001s3336 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 12731251-12736250 Capsella rubella
Carub.0001s3336 10.0kb upstream 10.0kb upstream 11433 true scaffold_1: 12719818-12731250 Capsella rubella
Carub.0001s3336 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 12719818-12729817 Capsella rubella
Carub.0001s3336 10.0kb downstream 10.0kb downstream 11433 true scaffold_1: 12729818-12741250 Capsella rubella
Carub.0001s3336 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 12731251-12741250 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361845 5261 Brassicaceae View MSA
123798259 5264 Brassicales-Malvales View MSA
124295926 5266 SBM View MSA
124254787 5268 Malvidae View MSA
124074953 5270 Rosid View MSA
123751143 5271 Pentapetalae View MSA
122796795 5272 Eudicot View MSA
122049643 5273 Angiosperm View MSA
121351650 5274 Embryophyte View MSA
123428086 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain