Gene : Carub.0001s3142 C. rubella v1.1
Defline:  (1 of 2) PTHR21433 - TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA Genomic Order:  3142
Name:  ? Carub.0001s3142 Secondary Identifier:  ? PAC:39228377
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3142 0.5kb upstream 0.5kb upstream 3466 true scaffold_1: 11689675-11693140 Capsella rubella
Carub.0001s3142 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11689675-11690174 Capsella rubella
Carub.0001s3142 0.5kb downstream 0.5kb downstream 3466 true scaffold_1: 11690175-11693640 Capsella rubella
Carub.0001s3142 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11693141-11693640 Capsella rubella
Carub.0001s3142 1.0kb upstream 1.0kb upstream 3966 true scaffold_1: 11689175-11693140 Capsella rubella
Carub.0001s3142 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11689175-11690174 Capsella rubella
Carub.0001s3142 1.0kb downstream 1.0kb downstream 3966 true scaffold_1: 11690175-11694140 Capsella rubella
Carub.0001s3142 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11693141-11694140 Capsella rubella
Carub.0001s3142 2.0kb upstream 2.0kb upstream 4966 true scaffold_1: 11688175-11693140 Capsella rubella
Carub.0001s3142 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11688175-11690174 Capsella rubella
Carub.0001s3142 2.0kb downstream 2.0kb downstream 4966 true scaffold_1: 11690175-11695140 Capsella rubella
Carub.0001s3142 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11693141-11695140 Capsella rubella
Carub.0001s3142 5.0kb upstream 5.0kb upstream 7966 true scaffold_1: 11685175-11693140 Capsella rubella
Carub.0001s3142 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11685175-11690174 Capsella rubella
Carub.0001s3142 5.0kb downstream 5.0kb downstream 7966 true scaffold_1: 11690175-11698140 Capsella rubella
Carub.0001s3142 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11693141-11698140 Capsella rubella
Carub.0001s3142 10.0kb upstream 10.0kb upstream 12966 true scaffold_1: 11680175-11693140 Capsella rubella
Carub.0001s3142 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11680175-11690174 Capsella rubella
Carub.0001s3142 10.0kb downstream 10.0kb downstream 12966 true scaffold_1: 11690175-11703140 Capsella rubella
Carub.0001s3142 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11693141-11703140 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361948 5261 Brassicaceae View MSA
123837614 5264 Brassicales-Malvales View MSA
124337122 5266 SBM View MSA
124251175 5268 Malvidae View MSA
124065114 5270 Rosid View MSA
123747288 5271 Pentapetalae View MSA
122787986 5272 Eudicot View MSA
122046309 5273 Angiosperm View MSA
121351059 5274 Embryophyte View MSA
123427435 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain