Gene : Carub.0005s2887 C. rubella v1.1
Defline:  (1 of 4) K01881 - prolyl-tRNA synthetase (PARS, proS) Genomic Order:  2887
Name:  ? Carub.0005s2887 Secondary Identifier:  ? PAC:39226626
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2887 0.5kb upstream 0.5kb upstream 3277 true scaffold_5: 13268131-13271407 Capsella rubella
Carub.0005s2887 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 13270908-13271407 Capsella rubella
Carub.0005s2887 0.5kb downstream 0.5kb downstream 3277 true scaffold_5: 13267631-13270907 Capsella rubella
Carub.0005s2887 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 13267631-13268130 Capsella rubella
Carub.0005s2887 1.0kb upstream 1.0kb upstream 3777 true scaffold_5: 13268131-13271907 Capsella rubella
Carub.0005s2887 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 13270908-13271907 Capsella rubella
Carub.0005s2887 1.0kb downstream 1.0kb downstream 3777 true scaffold_5: 13267131-13270907 Capsella rubella
Carub.0005s2887 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 13267131-13268130 Capsella rubella
Carub.0005s2887 2.0kb upstream 2.0kb upstream 4777 true scaffold_5: 13268131-13272907 Capsella rubella
Carub.0005s2887 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 13270908-13272907 Capsella rubella
Carub.0005s2887 2.0kb downstream 2.0kb downstream 4777 true scaffold_5: 13266131-13270907 Capsella rubella
Carub.0005s2887 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 13266131-13268130 Capsella rubella
Carub.0005s2887 5.0kb upstream 5.0kb upstream 7777 true scaffold_5: 13268131-13275907 Capsella rubella
Carub.0005s2887 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 13270908-13275907 Capsella rubella
Carub.0005s2887 5.0kb downstream 5.0kb downstream 7777 true scaffold_5: 13263131-13270907 Capsella rubella
Carub.0005s2887 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 13263131-13268130 Capsella rubella
Carub.0005s2887 10.0kb upstream 10.0kb upstream 12777 true scaffold_5: 13268131-13280907 Capsella rubella
Carub.0005s2887 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 13270908-13280907 Capsella rubella
Carub.0005s2887 10.0kb downstream 10.0kb downstream 12777 true scaffold_5: 13258131-13270907 Capsella rubella
Carub.0005s2887 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 13258131-13268130 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365316 5261 Brassicaceae View MSA
123831041 5264 Brassicales-Malvales View MSA
124348511 5266 SBM View MSA
124247467 5268 Malvidae View MSA
124064223 5270 Rosid View MSA
123739091 5271 Pentapetalae View MSA
122787738 5272 Eudicot View MSA
122046547 5273 Angiosperm View MSA
121346675 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain