Gene : Carub.0001s3054 C. rubella v1.1
Defline:  (1 of 2) K12668 - oligosaccharyltransferase complex subunit epsilon (OST2, DAD1) Genomic Order:  3054
Name:  ? Carub.0001s3054 Secondary Identifier:  ? PAC:39230385
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3054 0.5kb upstream 0.5kb upstream 2153 true scaffold_1: 11293141-11295293 Capsella rubella
Carub.0001s3054 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11294794-11295293 Capsella rubella
Carub.0001s3054 0.5kb downstream 0.5kb downstream 2153 true scaffold_1: 11292641-11294793 Capsella rubella
Carub.0001s3054 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11292641-11293140 Capsella rubella
Carub.0001s3054 1.0kb upstream 1.0kb upstream 2653 true scaffold_1: 11293141-11295793 Capsella rubella
Carub.0001s3054 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11294794-11295793 Capsella rubella
Carub.0001s3054 1.0kb downstream 1.0kb downstream 2653 true scaffold_1: 11292141-11294793 Capsella rubella
Carub.0001s3054 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11292141-11293140 Capsella rubella
Carub.0001s3054 2.0kb upstream 2.0kb upstream 3653 true scaffold_1: 11293141-11296793 Capsella rubella
Carub.0001s3054 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11294794-11296793 Capsella rubella
Carub.0001s3054 2.0kb downstream 2.0kb downstream 3653 true scaffold_1: 11291141-11294793 Capsella rubella
Carub.0001s3054 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11291141-11293140 Capsella rubella
Carub.0001s3054 5.0kb upstream 5.0kb upstream 6653 true scaffold_1: 11293141-11299793 Capsella rubella
Carub.0001s3054 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11294794-11299793 Capsella rubella
Carub.0001s3054 5.0kb downstream 5.0kb downstream 6653 true scaffold_1: 11288141-11294793 Capsella rubella
Carub.0001s3054 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11288141-11293140 Capsella rubella
Carub.0001s3054 10.0kb upstream 10.0kb upstream 11653 true scaffold_1: 11293141-11304793 Capsella rubella
Carub.0001s3054 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11294794-11304793 Capsella rubella
Carub.0001s3054 10.0kb downstream 10.0kb downstream 11653 true scaffold_1: 11283141-11294793 Capsella rubella
Carub.0001s3054 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11283141-11293140 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361318 5261 Brassicaceae View MSA
123837119 5264 Brassicales-Malvales View MSA
124341057 5266 SBM View MSA
124239308 5268 Malvidae View MSA
124061217 5270 Rosid View MSA
123742864 5271 Pentapetalae View MSA
122792667 5272 Eudicot View MSA
122049085 5273 Angiosperm View MSA
121345892 5274 Embryophyte View MSA
123425631 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain