Gene : Carub.0001s2832 C. rubella v1.1
Defline:  (1 of 2) PTHR10543:SF42 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED2, CHLOROPLASTIC-RELATED Genomic Order:  2832
Name:  ? Carub.0001s2832 Secondary Identifier:  ? PAC:39227911
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-695 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2832 0.5kb upstream 0.5kb upstream 2291 true scaffold_1: 10340430-10342720 Capsella rubella
Carub.0001s2832 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 10340430-10340929 Capsella rubella
Carub.0001s2832 0.5kb downstream 0.5kb downstream 2291 true scaffold_1: 10340930-10343220 Capsella rubella
Carub.0001s2832 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 10342721-10343220 Capsella rubella
Carub.0001s2832 1.0kb upstream 1.0kb upstream 2791 true scaffold_1: 10339930-10342720 Capsella rubella
Carub.0001s2832 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 10339930-10340929 Capsella rubella
Carub.0001s2832 1.0kb downstream 1.0kb downstream 2791 true scaffold_1: 10340930-10343720 Capsella rubella
Carub.0001s2832 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 10342721-10343720 Capsella rubella
Carub.0001s2832 2.0kb upstream 2.0kb upstream 3791 true scaffold_1: 10338930-10342720 Capsella rubella
Carub.0001s2832 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 10338930-10340929 Capsella rubella
Carub.0001s2832 2.0kb downstream 2.0kb downstream 3791 true scaffold_1: 10340930-10344720 Capsella rubella
Carub.0001s2832 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 10342721-10344720 Capsella rubella
Carub.0001s2832 5.0kb upstream 5.0kb upstream 6791 true scaffold_1: 10335930-10342720 Capsella rubella
Carub.0001s2832 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 10335930-10340929 Capsella rubella
Carub.0001s2832 5.0kb downstream 5.0kb downstream 6791 true scaffold_1: 10340930-10347720 Capsella rubella
Carub.0001s2832 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 10342721-10347720 Capsella rubella
Carub.0001s2832 10.0kb upstream 10.0kb upstream 11791 true scaffold_1: 10330930-10342720 Capsella rubella
Carub.0001s2832 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 10330930-10340929 Capsella rubella
Carub.0001s2832 10.0kb downstream 10.0kb downstream 11791 true scaffold_1: 10340930-10352720 Capsella rubella
Carub.0001s2832 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 10342721-10352720 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372061 5261 Brassicaceae View MSA
123836894 5264 Brassicales-Malvales View MSA
124346886 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain