Gene : Carub.0001s0076 C. rubella v1.1
Defline:  (1 of 2) PTHR11751//PTHR11751:SF380 - SUBGROUP I AMINOTRANSFERASE RELATED // 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2-RELATED Genomic Order:  76
Name:  ? Carub.0001s0076 Secondary Identifier:  ? PAC:39228972
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ETHYL-PWY Capsella rubella pathologic  
Crubella PWY-7270 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0076 0.5kb upstream 0.5kb upstream 2789 true scaffold_1: 267985-270773 Capsella rubella
Carub.0001s0076 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 270274-270773 Capsella rubella
Carub.0001s0076 0.5kb downstream 0.5kb downstream 2789 true scaffold_1: 267485-270273 Capsella rubella
Carub.0001s0076 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 267485-267984 Capsella rubella
Carub.0001s0076 1.0kb upstream 1.0kb upstream 3289 true scaffold_1: 267985-271273 Capsella rubella
Carub.0001s0076 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 270274-271273 Capsella rubella
Carub.0001s0076 1.0kb downstream 1.0kb downstream 3289 true scaffold_1: 266985-270273 Capsella rubella
Carub.0001s0076 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 266985-267984 Capsella rubella
Carub.0001s0076 2.0kb upstream 2.0kb upstream 4289 true scaffold_1: 267985-272273 Capsella rubella
Carub.0001s0076 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 270274-272273 Capsella rubella
Carub.0001s0076 2.0kb downstream 2.0kb downstream 4289 true scaffold_1: 265985-270273 Capsella rubella
Carub.0001s0076 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 265985-267984 Capsella rubella
Carub.0001s0076 5.0kb upstream 5.0kb upstream 7289 true scaffold_1: 267985-275273 Capsella rubella
Carub.0001s0076 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 270274-275273 Capsella rubella
Carub.0001s0076 5.0kb downstream 5.0kb downstream 7289 true scaffold_1: 262985-270273 Capsella rubella
Carub.0001s0076 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 262985-267984 Capsella rubella
Carub.0001s0076 10.0kb upstream 10.0kb upstream 12289 true scaffold_1: 267985-280273 Capsella rubella
Carub.0001s0076 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 270274-280273 Capsella rubella
Carub.0001s0076 10.0kb downstream 10.0kb downstream 12289 true scaffold_1: 257985-270273 Capsella rubella
Carub.0001s0076 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 257985-267984 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368056 5261 Brassicaceae View MSA
123841414 5264 Brassicales-Malvales View MSA
124344234 5266 SBM View MSA
124243868 5268 Malvidae View MSA
124064739 5270 Rosid View MSA
123742797 5271 Pentapetalae View MSA
122787155 5272 Eudicot View MSA
122050094 5273 Angiosperm View MSA
121311735 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain