Gene : Carub.0001s0079 C. rubella v1.1
Defline:  (1 of 2) KOG0229 - Phosphatidylinositol-4-phosphate 5-kinase Genomic Order:  79
Name:  ? Carub.0001s0079 Secondary Identifier:  ? PAC:39231050
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6351 Capsella rubella pathologic  
Crubella PWY-6352 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0079 0.5kb upstream 0.5kb upstream 2527 true scaffold_1: 281996-284522 Capsella rubella
Carub.0001s0079 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 284023-284522 Capsella rubella
Carub.0001s0079 0.5kb downstream 0.5kb downstream 2527 true scaffold_1: 281496-284022 Capsella rubella
Carub.0001s0079 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 281496-281995 Capsella rubella
Carub.0001s0079 1.0kb upstream 1.0kb upstream 3027 true scaffold_1: 281996-285022 Capsella rubella
Carub.0001s0079 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 284023-285022 Capsella rubella
Carub.0001s0079 1.0kb downstream 1.0kb downstream 3027 true scaffold_1: 280996-284022 Capsella rubella
Carub.0001s0079 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 280996-281995 Capsella rubella
Carub.0001s0079 2.0kb upstream 2.0kb upstream 4027 true scaffold_1: 281996-286022 Capsella rubella
Carub.0001s0079 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 284023-286022 Capsella rubella
Carub.0001s0079 2.0kb downstream 2.0kb downstream 4027 true scaffold_1: 279996-284022 Capsella rubella
Carub.0001s0079 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 279996-281995 Capsella rubella
Carub.0001s0079 5.0kb upstream 5.0kb upstream 7027 true scaffold_1: 281996-289022 Capsella rubella
Carub.0001s0079 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 284023-289022 Capsella rubella
Carub.0001s0079 5.0kb downstream 5.0kb downstream 7027 true scaffold_1: 276996-284022 Capsella rubella
Carub.0001s0079 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 276996-281995 Capsella rubella
Carub.0001s0079 10.0kb upstream 10.0kb upstream 12027 true scaffold_1: 281996-294022 Capsella rubella
Carub.0001s0079 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 284023-294022 Capsella rubella
Carub.0001s0079 10.0kb downstream 10.0kb downstream 12027 true scaffold_1: 271996-284022 Capsella rubella
Carub.0001s0079 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 271996-281995 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027967 5273 Angiosperm View MSA
122374442 5261 Brassicaceae View MSA
123829576 5264 Brassicales-Malvales View MSA
124321608 5266 SBM View MSA
124250315 5268 Malvidae View MSA
124037204 5270 Rosid View MSA
123741083 5271 Pentapetalae View MSA
122791627 5272 Eudicot View MSA
121349579 5274 Embryophyte View MSA
123428114 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain