Gene : Carub.0001s1548 C. rubella v1.1
Defline:  (1 of 1) PTHR11811//PTHR11811:SF35 - 6-PHOSPHOGLUCONATE DEHYDROGENASE // AROGENATE DEHYDROGENASE 2, CHLOROPLASTIC Genomic Order:  1548
Name:  ? Carub.0001s1548 Secondary Identifier:  ? PAC:39226953
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-3461 Capsella rubella pathologic  
Crubella PWY-3481 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1548 0.5kb upstream 0.5kb upstream 2131 true scaffold_1: 5468152-5470282 Capsella rubella
Carub.0001s1548 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5468152-5468651 Capsella rubella
Carub.0001s1548 0.5kb downstream 0.5kb downstream 2131 true scaffold_1: 5468652-5470782 Capsella rubella
Carub.0001s1548 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5470283-5470782 Capsella rubella
Carub.0001s1548 1.0kb upstream 1.0kb upstream 2631 true scaffold_1: 5467652-5470282 Capsella rubella
Carub.0001s1548 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5467652-5468651 Capsella rubella
Carub.0001s1548 1.0kb downstream 1.0kb downstream 2631 true scaffold_1: 5468652-5471282 Capsella rubella
Carub.0001s1548 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5470283-5471282 Capsella rubella
Carub.0001s1548 2.0kb upstream 2.0kb upstream 3631 true scaffold_1: 5466652-5470282 Capsella rubella
Carub.0001s1548 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5466652-5468651 Capsella rubella
Carub.0001s1548 2.0kb downstream 2.0kb downstream 3631 true scaffold_1: 5468652-5472282 Capsella rubella
Carub.0001s1548 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5470283-5472282 Capsella rubella
Carub.0001s1548 5.0kb upstream 5.0kb upstream 6631 true scaffold_1: 5463652-5470282 Capsella rubella
Carub.0001s1548 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5463652-5468651 Capsella rubella
Carub.0001s1548 5.0kb downstream 5.0kb downstream 6631 true scaffold_1: 5468652-5475282 Capsella rubella
Carub.0001s1548 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5470283-5475282 Capsella rubella
Carub.0001s1548 10.0kb upstream 10.0kb upstream 11631 true scaffold_1: 5458652-5470282 Capsella rubella
Carub.0001s1548 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5458652-5468651 Capsella rubella
Carub.0001s1548 10.0kb downstream 10.0kb downstream 11631 true scaffold_1: 5468652-5480282 Capsella rubella
Carub.0001s1548 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5470283-5480282 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369917 5261 Brassicaceae View MSA
123830710 5264 Brassicales-Malvales View MSA
124346336 5266 SBM View MSA
124247308 5268 Malvidae View MSA
124070774 5270 Rosid View MSA
123749744 5271 Pentapetalae View MSA
122797141 5272 Eudicot View MSA
122050819 5273 Angiosperm View MSA
121351682 5274 Embryophyte View MSA
123427304 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain