Gene : Carub.0001s1575 C. rubella v1.1
Defline:  (1 of 2) K09753 - cinnamoyl-CoA reductase (CCR) Genomic Order:  1575
Name:  ? Carub.0001s1575 Secondary Identifier:  ? PAC:39231492
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-361 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1575 0.5kb upstream 0.5kb upstream 3593 true scaffold_1: 5548843-5552435 Capsella rubella
Carub.0001s1575 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5548843-5549342 Capsella rubella
Carub.0001s1575 0.5kb downstream 0.5kb downstream 3593 true scaffold_1: 5549343-5552935 Capsella rubella
Carub.0001s1575 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5552436-5552935 Capsella rubella
Carub.0001s1575 1.0kb upstream 1.0kb upstream 4093 true scaffold_1: 5548343-5552435 Capsella rubella
Carub.0001s1575 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5548343-5549342 Capsella rubella
Carub.0001s1575 1.0kb downstream 1.0kb downstream 4093 true scaffold_1: 5549343-5553435 Capsella rubella
Carub.0001s1575 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5552436-5553435 Capsella rubella
Carub.0001s1575 2.0kb upstream 2.0kb upstream 5093 true scaffold_1: 5547343-5552435 Capsella rubella
Carub.0001s1575 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5547343-5549342 Capsella rubella
Carub.0001s1575 2.0kb downstream 2.0kb downstream 5093 true scaffold_1: 5549343-5554435 Capsella rubella
Carub.0001s1575 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5552436-5554435 Capsella rubella
Carub.0001s1575 5.0kb upstream 5.0kb upstream 8093 true scaffold_1: 5544343-5552435 Capsella rubella
Carub.0001s1575 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5544343-5549342 Capsella rubella
Carub.0001s1575 5.0kb downstream 5.0kb downstream 8093 true scaffold_1: 5549343-5557435 Capsella rubella
Carub.0001s1575 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5552436-5557435 Capsella rubella
Carub.0001s1575 10.0kb upstream 10.0kb upstream 13093 true scaffold_1: 5539343-5552435 Capsella rubella
Carub.0001s1575 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5539343-5549342 Capsella rubella
Carub.0001s1575 10.0kb downstream 10.0kb downstream 13093 true scaffold_1: 5549343-5562435 Capsella rubella
Carub.0001s1575 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5552436-5562435 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041043 5273 Angiosperm View MSA
122380734 5261 Brassicaceae View MSA
123829409 5264 Brassicales-Malvales View MSA
124344604 5266 SBM View MSA
124243551 5268 Malvidae View MSA
124063767 5270 Rosid View MSA
123748181 5271 Pentapetalae View MSA
122792644 5272 Eudicot View MSA
121350507 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain