Gene : Carub.0006s0068 C. rubella v1.1
Defline:  (1 of 16) 2.3.1.133 - Shikimate O-hydroxycinnamoyltransferase Genomic Order:  68
Name:  ? Carub.0006s0068 Secondary Identifier:  ? PAC:39248400
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-361 Capsella rubella pathologic  
Crubella PWY-6039 Capsella rubella pathologic  
Crubella PWY-6040 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0068 0.5kb upstream 0.5kb upstream 2352 true scaffold_6: 246595-248946 Capsella rubella
Carub.0006s0068 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 248447-248946 Capsella rubella
Carub.0006s0068 0.5kb downstream 0.5kb downstream 2352 true scaffold_6: 246095-248446 Capsella rubella
Carub.0006s0068 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 246095-246594 Capsella rubella
Carub.0006s0068 1.0kb upstream 1.0kb upstream 2852 true scaffold_6: 246595-249446 Capsella rubella
Carub.0006s0068 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 248447-249446 Capsella rubella
Carub.0006s0068 1.0kb downstream 1.0kb downstream 2852 true scaffold_6: 245595-248446 Capsella rubella
Carub.0006s0068 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 245595-246594 Capsella rubella
Carub.0006s0068 2.0kb upstream 2.0kb upstream 3852 true scaffold_6: 246595-250446 Capsella rubella
Carub.0006s0068 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 248447-250446 Capsella rubella
Carub.0006s0068 2.0kb downstream 2.0kb downstream 3852 true scaffold_6: 244595-248446 Capsella rubella
Carub.0006s0068 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 244595-246594 Capsella rubella
Carub.0006s0068 5.0kb upstream 5.0kb upstream 6852 true scaffold_6: 246595-253446 Capsella rubella
Carub.0006s0068 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 248447-253446 Capsella rubella
Carub.0006s0068 5.0kb downstream 5.0kb downstream 6852 true scaffold_6: 241595-248446 Capsella rubella
Carub.0006s0068 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 241595-246594 Capsella rubella
Carub.0006s0068 10.0kb upstream 10.0kb upstream 11852 true scaffold_6: 246595-258446 Capsella rubella
Carub.0006s0068 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 248447-258446 Capsella rubella
Carub.0006s0068 10.0kb downstream 10.0kb downstream 11852 true scaffold_6: 236595-248446 Capsella rubella
Carub.0006s0068 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 236595-246594 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362832 5261 Brassicaceae View MSA
123830100 5264 Brassicales-Malvales View MSA
124345932 5266 SBM View MSA
124241469 5268 Malvidae View MSA
124064674 5270 Rosid View MSA
123740627 5271 Pentapetalae View MSA
122795284 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain