Gene : Carub.0001s1677 C. rubella v1.1
Defline:  (1 of 2) 2.5.1.90 - All-trans-octaprenyl-diphosphate synthase / Trans-prenyltransferase Genomic Order:  1677
Name:  ? Carub.0001s1677 Secondary Identifier:  ? PAC:39230270
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella HEXPPSYN-PWY Capsella rubella pathologic  
Crubella PWY-5120 Capsella rubella pathologic  
Crubella PWY-5783 Capsella rubella pathologic  
Crubella PWY-5805 Capsella rubella pathologic  
Crubella PWY-5807 Capsella rubella pathologic  
Crubella PWY-5864 Capsella rubella pathologic  
Crubella PWY-5910 Capsella rubella pathologic  
Crubella PWY-6520 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1677 0.5kb upstream 0.5kb upstream 2981 true scaffold_1: 5880439-5883419 Capsella rubella
Carub.0001s1677 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5880439-5880938 Capsella rubella
Carub.0001s1677 0.5kb downstream 0.5kb downstream 2981 true scaffold_1: 5880939-5883919 Capsella rubella
Carub.0001s1677 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5883420-5883919 Capsella rubella
Carub.0001s1677 1.0kb upstream 1.0kb upstream 3481 true scaffold_1: 5879939-5883419 Capsella rubella
Carub.0001s1677 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5879939-5880938 Capsella rubella
Carub.0001s1677 1.0kb downstream 1.0kb downstream 3481 true scaffold_1: 5880939-5884419 Capsella rubella
Carub.0001s1677 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5883420-5884419 Capsella rubella
Carub.0001s1677 2.0kb upstream 2.0kb upstream 4481 true scaffold_1: 5878939-5883419 Capsella rubella
Carub.0001s1677 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5878939-5880938 Capsella rubella
Carub.0001s1677 2.0kb downstream 2.0kb downstream 4481 true scaffold_1: 5880939-5885419 Capsella rubella
Carub.0001s1677 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5883420-5885419 Capsella rubella
Carub.0001s1677 5.0kb upstream 5.0kb upstream 7481 true scaffold_1: 5875939-5883419 Capsella rubella
Carub.0001s1677 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5875939-5880938 Capsella rubella
Carub.0001s1677 5.0kb downstream 5.0kb downstream 7481 true scaffold_1: 5880939-5888419 Capsella rubella
Carub.0001s1677 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5883420-5888419 Capsella rubella
Carub.0001s1677 10.0kb upstream 10.0kb upstream 12481 true scaffold_1: 5870939-5883419 Capsella rubella
Carub.0001s1677 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5870939-5880938 Capsella rubella
Carub.0001s1677 10.0kb downstream 10.0kb downstream 12481 true scaffold_1: 5880939-5893419 Capsella rubella
Carub.0001s1677 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5883420-5893419 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041065 5273 Angiosperm View MSA
122378497 5261 Brassicaceae View MSA
123836843 5264 Brassicales-Malvales View MSA
124340662 5266 SBM View MSA
124241252 5268 Malvidae View MSA
124065347 5270 Rosid View MSA
123746184 5271 Pentapetalae View MSA
122791358 5272 Eudicot View MSA
121345449 5274 Embryophyte View MSA
123424009 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain