Gene : Carub.0001s1217 C. rubella v1.1
Defline:  (1 of 3) K14270 - aminotransferase (ACS10_12) Genomic Order:  1217
Name:  ? Carub.0001s1217 Secondary Identifier:  ? PAC:39227424
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ASPARTATE-DEG1-PWY Capsella rubella pathologic  
Crubella ASPARTATESYN-PWY Capsella rubella pathologic  
Crubella PWY-3001 Capsella rubella pathologic  
Crubella PWY-7115 Capsella rubella pathologic  
Crubella PWY-7117 Capsella rubella pathologic  
Crubella THRESYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1217 0.5kb upstream 0.5kb upstream 2570 true scaffold_1: 4339857-4342426 Capsella rubella
Carub.0001s1217 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4341927-4342426 Capsella rubella
Carub.0001s1217 0.5kb downstream 0.5kb downstream 2570 true scaffold_1: 4339357-4341926 Capsella rubella
Carub.0001s1217 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4339357-4339856 Capsella rubella
Carub.0001s1217 1.0kb upstream 1.0kb upstream 3070 true scaffold_1: 4339857-4342926 Capsella rubella
Carub.0001s1217 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4341927-4342926 Capsella rubella
Carub.0001s1217 1.0kb downstream 1.0kb downstream 3070 true scaffold_1: 4338857-4341926 Capsella rubella
Carub.0001s1217 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4338857-4339856 Capsella rubella
Carub.0001s1217 2.0kb upstream 2.0kb upstream 4070 true scaffold_1: 4339857-4343926 Capsella rubella
Carub.0001s1217 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4341927-4343926 Capsella rubella
Carub.0001s1217 2.0kb downstream 2.0kb downstream 4070 true scaffold_1: 4337857-4341926 Capsella rubella
Carub.0001s1217 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4337857-4339856 Capsella rubella
Carub.0001s1217 5.0kb upstream 5.0kb upstream 7070 true scaffold_1: 4339857-4346926 Capsella rubella
Carub.0001s1217 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4341927-4346926 Capsella rubella
Carub.0001s1217 5.0kb downstream 5.0kb downstream 7070 true scaffold_1: 4334857-4341926 Capsella rubella
Carub.0001s1217 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4334857-4339856 Capsella rubella
Carub.0001s1217 10.0kb upstream 10.0kb upstream 12070 true scaffold_1: 4339857-4351926 Capsella rubella
Carub.0001s1217 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4341927-4351926 Capsella rubella
Carub.0001s1217 10.0kb downstream 10.0kb downstream 12070 true scaffold_1: 4329857-4341926 Capsella rubella
Carub.0001s1217 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4329857-4339856 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343087 5261 Brassicaceae View MSA
123783388 5264 Brassicales-Malvales View MSA
124281623 5266 SBM View MSA
124136347 5268 Malvidae View MSA
124060973 5270 Rosid View MSA
123749397 5271 Pentapetalae View MSA
122792167 5272 Eudicot View MSA
122042730 5273 Angiosperm View MSA
121351183 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain