Gene : Carub.0001s1529 C. rubella v1.1
Defline:  (1 of 56) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1529
Name:  ? Carub.0001s1529 Secondary Identifier:  ? PAC:39229109
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1529 0.5kb upstream 0.5kb upstream 3325 true scaffold_1: 5397056-5400380 Capsella rubella
Carub.0001s1529 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5397056-5397555 Capsella rubella
Carub.0001s1529 0.5kb downstream 0.5kb downstream 3325 true scaffold_1: 5397556-5400880 Capsella rubella
Carub.0001s1529 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5400381-5400880 Capsella rubella
Carub.0001s1529 1.0kb upstream 1.0kb upstream 3825 true scaffold_1: 5396556-5400380 Capsella rubella
Carub.0001s1529 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5396556-5397555 Capsella rubella
Carub.0001s1529 1.0kb downstream 1.0kb downstream 3825 true scaffold_1: 5397556-5401380 Capsella rubella
Carub.0001s1529 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5400381-5401380 Capsella rubella
Carub.0001s1529 2.0kb upstream 2.0kb upstream 4825 true scaffold_1: 5395556-5400380 Capsella rubella
Carub.0001s1529 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5395556-5397555 Capsella rubella
Carub.0001s1529 2.0kb downstream 2.0kb downstream 4825 true scaffold_1: 5397556-5402380 Capsella rubella
Carub.0001s1529 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5400381-5402380 Capsella rubella
Carub.0001s1529 5.0kb upstream 5.0kb upstream 7825 true scaffold_1: 5392556-5400380 Capsella rubella
Carub.0001s1529 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5392556-5397555 Capsella rubella
Carub.0001s1529 5.0kb downstream 5.0kb downstream 7825 true scaffold_1: 5397556-5405380 Capsella rubella
Carub.0001s1529 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5400381-5405380 Capsella rubella
Carub.0001s1529 10.0kb upstream 10.0kb upstream 12825 true scaffold_1: 5387556-5400380 Capsella rubella
Carub.0001s1529 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5387556-5397555 Capsella rubella
Carub.0001s1529 10.0kb downstream 10.0kb downstream 12825 true scaffold_1: 5397556-5410380 Capsella rubella
Carub.0001s1529 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5400381-5410380 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364844 5261 Brassicaceae View MSA
123833186 5264 Brassicales-Malvales View MSA
124338183 5266 SBM View MSA
124245140 5268 Malvidae View MSA
124060776 5270 Rosid View MSA
123741024 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain