Gene : Carub.0001s1301 C. rubella v1.1
Defline:  (1 of 4) 5.3.99.6 - Allene-oxide cyclase Genomic Order:  1301
Name:  ? Carub.0001s1301 Secondary Identifier:  ? PAC:39230463
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-735 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1301 0.5kb upstream 0.5kb upstream 1717 true scaffold_1: 4648800-4650516 Capsella rubella
Carub.0001s1301 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4648800-4649299 Capsella rubella
Carub.0001s1301 0.5kb downstream 0.5kb downstream 1717 true scaffold_1: 4649300-4651016 Capsella rubella
Carub.0001s1301 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4650517-4651016 Capsella rubella
Carub.0001s1301 1.0kb upstream 1.0kb upstream 2217 true scaffold_1: 4648300-4650516 Capsella rubella
Carub.0001s1301 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4648300-4649299 Capsella rubella
Carub.0001s1301 1.0kb downstream 1.0kb downstream 2217 true scaffold_1: 4649300-4651516 Capsella rubella
Carub.0001s1301 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4650517-4651516 Capsella rubella
Carub.0001s1301 2.0kb upstream 2.0kb upstream 3217 true scaffold_1: 4647300-4650516 Capsella rubella
Carub.0001s1301 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4647300-4649299 Capsella rubella
Carub.0001s1301 2.0kb downstream 2.0kb downstream 3217 true scaffold_1: 4649300-4652516 Capsella rubella
Carub.0001s1301 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4650517-4652516 Capsella rubella
Carub.0001s1301 5.0kb upstream 5.0kb upstream 6217 true scaffold_1: 4644300-4650516 Capsella rubella
Carub.0001s1301 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4644300-4649299 Capsella rubella
Carub.0001s1301 5.0kb downstream 5.0kb downstream 6217 true scaffold_1: 4649300-4655516 Capsella rubella
Carub.0001s1301 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4650517-4655516 Capsella rubella
Carub.0001s1301 10.0kb upstream 10.0kb upstream 11217 true scaffold_1: 4639300-4650516 Capsella rubella
Carub.0001s1301 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4639300-4649299 Capsella rubella
Carub.0001s1301 10.0kb downstream 10.0kb downstream 11217 true scaffold_1: 4649300-4660516 Capsella rubella
Carub.0001s1301 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4650517-4660516 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380510 5261 Brassicaceae View MSA
123828498 5264 Brassicales-Malvales View MSA
124339249 5266 SBM View MSA
124252758 5268 Malvidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain