Gene : Carub.0001s1335 C. rubella v1.1
Defline:  (1 of 29) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1335
Name:  ? Carub.0001s1335 Secondary Identifier:  ? PAC:39229082
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1335 0.5kb upstream 0.5kb upstream 4224 true scaffold_1: 4757525-4761748 Capsella rubella
Carub.0001s1335 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4761249-4761748 Capsella rubella
Carub.0001s1335 0.5kb downstream 0.5kb downstream 4224 true scaffold_1: 4757025-4761248 Capsella rubella
Carub.0001s1335 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4757025-4757524 Capsella rubella
Carub.0001s1335 1.0kb upstream 1.0kb upstream 4724 true scaffold_1: 4757525-4762248 Capsella rubella
Carub.0001s1335 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4761249-4762248 Capsella rubella
Carub.0001s1335 1.0kb downstream 1.0kb downstream 4724 true scaffold_1: 4756525-4761248 Capsella rubella
Carub.0001s1335 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4756525-4757524 Capsella rubella
Carub.0001s1335 2.0kb upstream 2.0kb upstream 5724 true scaffold_1: 4757525-4763248 Capsella rubella
Carub.0001s1335 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4761249-4763248 Capsella rubella
Carub.0001s1335 2.0kb downstream 2.0kb downstream 5724 true scaffold_1: 4755525-4761248 Capsella rubella
Carub.0001s1335 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4755525-4757524 Capsella rubella
Carub.0001s1335 5.0kb upstream 5.0kb upstream 8724 true scaffold_1: 4757525-4766248 Capsella rubella
Carub.0001s1335 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4761249-4766248 Capsella rubella
Carub.0001s1335 5.0kb downstream 5.0kb downstream 8724 true scaffold_1: 4752525-4761248 Capsella rubella
Carub.0001s1335 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4752525-4757524 Capsella rubella
Carub.0001s1335 10.0kb upstream 10.0kb upstream 13724 true scaffold_1: 4757525-4771248 Capsella rubella
Carub.0001s1335 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4761249-4771248 Capsella rubella
Carub.0001s1335 10.0kb downstream 10.0kb downstream 13724 true scaffold_1: 4747525-4761248 Capsella rubella
Carub.0001s1335 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4747525-4757524 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122335128 5261 Brassicaceae Singleton cluster - no MSA
123841697 5264 Brassicales-Malvales View MSA
124340137 5266 SBM View MSA
124240017 5268 Malvidae View MSA
124072513 5270 Rosid View MSA
123747473 5271 Pentapetalae View MSA
122794645 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain