Gene : Carub.0001s1191 C. rubella v1.1
Defline:  (1 of 3) PTHR31953:SF17 - ACID BETA-FRUCTOFURANOSIDASE 3, VACUOLAR-RELATED Genomic Order:  1191
Name:  ? Carub.0001s1191 Secondary Identifier:  ? PAC:39230633
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-621 Capsella rubella pathologic  
Crubella PWY66-373 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1191 0.5kb upstream 0.5kb upstream 4223 true scaffold_1: 4236146-4240368 Capsella rubella
Carub.0001s1191 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4236146-4236645 Capsella rubella
Carub.0001s1191 0.5kb downstream 0.5kb downstream 4223 true scaffold_1: 4236646-4240868 Capsella rubella
Carub.0001s1191 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4240369-4240868 Capsella rubella
Carub.0001s1191 1.0kb upstream 1.0kb upstream 4723 true scaffold_1: 4235646-4240368 Capsella rubella
Carub.0001s1191 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4235646-4236645 Capsella rubella
Carub.0001s1191 1.0kb downstream 1.0kb downstream 4723 true scaffold_1: 4236646-4241368 Capsella rubella
Carub.0001s1191 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4240369-4241368 Capsella rubella
Carub.0001s1191 2.0kb upstream 2.0kb upstream 5723 true scaffold_1: 4234646-4240368 Capsella rubella
Carub.0001s1191 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4234646-4236645 Capsella rubella
Carub.0001s1191 2.0kb downstream 2.0kb downstream 5723 true scaffold_1: 4236646-4242368 Capsella rubella
Carub.0001s1191 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4240369-4242368 Capsella rubella
Carub.0001s1191 5.0kb upstream 5.0kb upstream 8723 true scaffold_1: 4231646-4240368 Capsella rubella
Carub.0001s1191 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4231646-4236645 Capsella rubella
Carub.0001s1191 5.0kb downstream 5.0kb downstream 8723 true scaffold_1: 4236646-4245368 Capsella rubella
Carub.0001s1191 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4240369-4245368 Capsella rubella
Carub.0001s1191 10.0kb upstream 10.0kb upstream 13723 true scaffold_1: 4226646-4240368 Capsella rubella
Carub.0001s1191 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4226646-4236645 Capsella rubella
Carub.0001s1191 10.0kb downstream 10.0kb downstream 13723 true scaffold_1: 4236646-4250368 Capsella rubella
Carub.0001s1191 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4240369-4250368 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362944 5261 Brassicaceae View MSA
123833145 5264 Brassicales-Malvales View MSA
124346860 5266 SBM View MSA
124237884 5268 Malvidae View MSA
124068075 5270 Rosid View MSA
123746739 5271 Pentapetalae View MSA
122793331 5272 Eudicot View MSA
122044228 5273 Angiosperm View MSA
121350675 5274 Embryophyte View MSA
123428659 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain