Gene : Carub.0006s0169 C. rubella v1.1
Defline:  (1 of 1) PTHR11254//PTHR11254:SF350 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE // E3 UBIQUITIN-PROTEIN LIGASE UPL4 Genomic Order:  169
Name:  ? Carub.0006s0169 Secondary Identifier:  ? PAC:39246964
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0169 0.5kb upstream 0.5kb upstream 7682 true scaffold_6: 613704-621385 Capsella rubella
Carub.0006s0169 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 613704-614203 Capsella rubella
Carub.0006s0169 0.5kb downstream 0.5kb downstream 7682 true scaffold_6: 614204-621885 Capsella rubella
Carub.0006s0169 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 621386-621885 Capsella rubella
Carub.0006s0169 1.0kb upstream 1.0kb upstream 8182 true scaffold_6: 613204-621385 Capsella rubella
Carub.0006s0169 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 613204-614203 Capsella rubella
Carub.0006s0169 1.0kb downstream 1.0kb downstream 8182 true scaffold_6: 614204-622385 Capsella rubella
Carub.0006s0169 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 621386-622385 Capsella rubella
Carub.0006s0169 2.0kb upstream 2.0kb upstream 9182 true scaffold_6: 612204-621385 Capsella rubella
Carub.0006s0169 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 612204-614203 Capsella rubella
Carub.0006s0169 2.0kb downstream 2.0kb downstream 9182 true scaffold_6: 614204-623385 Capsella rubella
Carub.0006s0169 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 621386-623385 Capsella rubella
Carub.0006s0169 5.0kb upstream 5.0kb upstream 12182 true scaffold_6: 609204-621385 Capsella rubella
Carub.0006s0169 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 609204-614203 Capsella rubella
Carub.0006s0169 5.0kb downstream 5.0kb downstream 12182 true scaffold_6: 614204-626385 Capsella rubella
Carub.0006s0169 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 621386-626385 Capsella rubella
Carub.0006s0169 10.0kb upstream 10.0kb upstream 17182 true scaffold_6: 604204-621385 Capsella rubella
Carub.0006s0169 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 604204-614203 Capsella rubella
Carub.0006s0169 10.0kb downstream 10.0kb downstream 17182 true scaffold_6: 614204-631385 Capsella rubella
Carub.0006s0169 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 621386-631385 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377771 5261 Brassicaceae View MSA
123828199 5264 Brassicales-Malvales View MSA
124340114 5266 SBM View MSA
124240618 5268 Malvidae View MSA
124066546 5270 Rosid View MSA
123736938 5271 Pentapetalae View MSA
122796953 5272 Eudicot View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain