Gene : Carub.0001s0492 C. rubella v1.1
Defline:  (1 of 1) PTHR22600//PTHR22600:SF0 - BETA-HEXOSAMINIDASE // BETA-HEXOSAMINIDASE Genomic Order:  492
Name:  ? Carub.0001s0492 Secondary Identifier:  ? PAC:39227462
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6902 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0492 0.5kb upstream 0.5kb upstream 3052 true scaffold_1: 1748373-1751424 Capsella rubella
Carub.0001s0492 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1748373-1748872 Capsella rubella
Carub.0001s0492 0.5kb downstream 0.5kb downstream 3052 true scaffold_1: 1748873-1751924 Capsella rubella
Carub.0001s0492 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1751425-1751924 Capsella rubella
Carub.0001s0492 1.0kb upstream 1.0kb upstream 3552 true scaffold_1: 1747873-1751424 Capsella rubella
Carub.0001s0492 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1747873-1748872 Capsella rubella
Carub.0001s0492 1.0kb downstream 1.0kb downstream 3552 true scaffold_1: 1748873-1752424 Capsella rubella
Carub.0001s0492 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1751425-1752424 Capsella rubella
Carub.0001s0492 2.0kb upstream 2.0kb upstream 4552 true scaffold_1: 1746873-1751424 Capsella rubella
Carub.0001s0492 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1746873-1748872 Capsella rubella
Carub.0001s0492 2.0kb downstream 2.0kb downstream 4552 true scaffold_1: 1748873-1753424 Capsella rubella
Carub.0001s0492 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1751425-1753424 Capsella rubella
Carub.0001s0492 5.0kb upstream 5.0kb upstream 7552 true scaffold_1: 1743873-1751424 Capsella rubella
Carub.0001s0492 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1743873-1748872 Capsella rubella
Carub.0001s0492 5.0kb downstream 5.0kb downstream 7552 true scaffold_1: 1748873-1756424 Capsella rubella
Carub.0001s0492 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1751425-1756424 Capsella rubella
Carub.0001s0492 10.0kb upstream 10.0kb upstream 12552 true scaffold_1: 1738873-1751424 Capsella rubella
Carub.0001s0492 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1738873-1748872 Capsella rubella
Carub.0001s0492 10.0kb downstream 10.0kb downstream 12552 true scaffold_1: 1748873-1761424 Capsella rubella
Carub.0001s0492 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1751425-1761424 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361529 5261 Brassicaceae View MSA
123831341 5264 Brassicales-Malvales View MSA
124339325 5266 SBM View MSA
124240039 5268 Malvidae View MSA
124063455 5270 Rosid View MSA
123738859 5271 Pentapetalae View MSA
122789804 5272 Eudicot View MSA
122047899 5273 Angiosperm View MSA
121347698 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain