Gene : Carub.0006s0507 C. rubella v1.1

Defline:  (1 of 4) PTHR11615:SF116 - CASPARIAN STRIP MEMBRANE PROTEIN 1-RELATED Genomic Order:  507
Name:  ? Carub.0006s0507 Secondary Identifier:  ? PAC:39248061

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0507 0.5kb upstream 0.5kb upstream 1284 true scaffold_6: 1861615-1862898 Capsella rubella
Carub.0006s0507 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1861615-1862114 Capsella rubella
Carub.0006s0507 0.5kb downstream 0.5kb downstream 1284 true scaffold_6: 1862115-1863398 Capsella rubella
Carub.0006s0507 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1862899-1863398 Capsella rubella
Carub.0006s0507 1.0kb upstream 1.0kb upstream 1784 true scaffold_6: 1861115-1862898 Capsella rubella
Carub.0006s0507 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1861115-1862114 Capsella rubella
Carub.0006s0507 1.0kb downstream 1.0kb downstream 1784 true scaffold_6: 1862115-1863898 Capsella rubella
Carub.0006s0507 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1862899-1863898 Capsella rubella
Carub.0006s0507 2.0kb upstream 2.0kb upstream 2784 true scaffold_6: 1860115-1862898 Capsella rubella
Carub.0006s0507 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1860115-1862114 Capsella rubella
Carub.0006s0507 2.0kb downstream 2.0kb downstream 2784 true scaffold_6: 1862115-1864898 Capsella rubella
Carub.0006s0507 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1862899-1864898 Capsella rubella
Carub.0006s0507 5.0kb upstream 5.0kb upstream 5784 true scaffold_6: 1857115-1862898 Capsella rubella
Carub.0006s0507 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1857115-1862114 Capsella rubella
Carub.0006s0507 5.0kb downstream 5.0kb downstream 5784 true scaffold_6: 1862115-1867898 Capsella rubella
Carub.0006s0507 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1862899-1867898 Capsella rubella
Carub.0006s0507 10.0kb upstream 10.0kb upstream 10784 true scaffold_6: 1852115-1862898 Capsella rubella
Carub.0006s0507 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1852115-1862114 Capsella rubella
Carub.0006s0507 10.0kb downstream 10.0kb downstream 10784 true scaffold_6: 1862115-1872898 Capsella rubella
Carub.0006s0507 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1862899-1872898 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343115 5261 Brassicaceae View MSA
123840781 5264 Brassicales-Malvales View MSA
124340578 5266 SBM View MSA
124251067 5268 Malvidae View MSA
124067511 5270 Rosid View MSA
123750360 5271 Pentapetalae View MSA
122793226 5272 Eudicot View MSA
122046070 5273 Angiosperm View MSA
121351638 5274 Embryophyte View MSA
123382256 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain