Gene : Carub.0006s0517 C. rubella v1.1
Defline:  (1 of 1) PTHR12300//PTHR12300:SF44 - HVA22-LIKE PROTEINS // SUBFAMILY NOT NAMED Genomic Order:  517
Name:  ? Carub.0006s0517 Secondary Identifier:  ? PAC:39246221
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0517 0.5kb upstream 0.5kb upstream 1835 true scaffold_6: 1900797-1902631 Capsella rubella
Carub.0006s0517 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1900797-1901296 Capsella rubella
Carub.0006s0517 0.5kb downstream 0.5kb downstream 1835 true scaffold_6: 1901297-1903131 Capsella rubella
Carub.0006s0517 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1902632-1903131 Capsella rubella
Carub.0006s0517 1.0kb upstream 1.0kb upstream 2335 true scaffold_6: 1900297-1902631 Capsella rubella
Carub.0006s0517 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1900297-1901296 Capsella rubella
Carub.0006s0517 1.0kb downstream 1.0kb downstream 2335 true scaffold_6: 1901297-1903631 Capsella rubella
Carub.0006s0517 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1902632-1903631 Capsella rubella
Carub.0006s0517 2.0kb upstream 2.0kb upstream 3335 true scaffold_6: 1899297-1902631 Capsella rubella
Carub.0006s0517 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1899297-1901296 Capsella rubella
Carub.0006s0517 2.0kb downstream 2.0kb downstream 3335 true scaffold_6: 1901297-1904631 Capsella rubella
Carub.0006s0517 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1902632-1904631 Capsella rubella
Carub.0006s0517 5.0kb upstream 5.0kb upstream 6335 true scaffold_6: 1896297-1902631 Capsella rubella
Carub.0006s0517 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1896297-1901296 Capsella rubella
Carub.0006s0517 5.0kb downstream 5.0kb downstream 6335 true scaffold_6: 1901297-1907631 Capsella rubella
Carub.0006s0517 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1902632-1907631 Capsella rubella
Carub.0006s0517 10.0kb upstream 10.0kb upstream 11335 true scaffold_6: 1891297-1902631 Capsella rubella
Carub.0006s0517 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1891297-1901296 Capsella rubella
Carub.0006s0517 10.0kb downstream 10.0kb downstream 11335 true scaffold_6: 1901297-1912631 Capsella rubella
Carub.0006s0517 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1902632-1912631 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372566 5261 Brassicaceae View MSA
123800387 5264 Brassicales-Malvales View MSA
124297803 5266 SBM View MSA
124149604 5268 Malvidae View MSA
123875379 5270 Rosid View MSA
123459207 5271 Pentapetalae View MSA
122494601 5272 Eudicot View MSA
122050664 5273 Angiosperm View MSA
121348530 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain