Gene : Carub.0006s0407 C. rubella v1.1
Defline:  (1 of 2) PTHR15141//PTHR15141:SF40 - TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3 // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED Genomic Order:  407
Name:  ? Carub.0006s0407 Secondary Identifier:  ? PAC:39248299
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0407 0.5kb upstream 0.5kb upstream 3697 true scaffold_6: 1497785-1501481 Capsella rubella
Carub.0006s0407 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1497785-1498284 Capsella rubella
Carub.0006s0407 0.5kb downstream 0.5kb downstream 3697 true scaffold_6: 1498285-1501981 Capsella rubella
Carub.0006s0407 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1501482-1501981 Capsella rubella
Carub.0006s0407 1.0kb upstream 1.0kb upstream 4197 true scaffold_6: 1497285-1501481 Capsella rubella
Carub.0006s0407 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1497285-1498284 Capsella rubella
Carub.0006s0407 1.0kb downstream 1.0kb downstream 4197 true scaffold_6: 1498285-1502481 Capsella rubella
Carub.0006s0407 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1501482-1502481 Capsella rubella
Carub.0006s0407 2.0kb upstream 2.0kb upstream 5197 true scaffold_6: 1496285-1501481 Capsella rubella
Carub.0006s0407 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1496285-1498284 Capsella rubella
Carub.0006s0407 2.0kb downstream 2.0kb downstream 5197 true scaffold_6: 1498285-1503481 Capsella rubella
Carub.0006s0407 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1501482-1503481 Capsella rubella
Carub.0006s0407 5.0kb upstream 5.0kb upstream 8197 true scaffold_6: 1493285-1501481 Capsella rubella
Carub.0006s0407 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1493285-1498284 Capsella rubella
Carub.0006s0407 5.0kb downstream 5.0kb downstream 8197 true scaffold_6: 1498285-1506481 Capsella rubella
Carub.0006s0407 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1501482-1506481 Capsella rubella
Carub.0006s0407 10.0kb upstream 10.0kb upstream 13197 true scaffold_6: 1488285-1501481 Capsella rubella
Carub.0006s0407 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1488285-1498284 Capsella rubella
Carub.0006s0407 10.0kb downstream 10.0kb downstream 13197 true scaffold_6: 1498285-1511481 Capsella rubella
Carub.0006s0407 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1501482-1511481 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374358 5261 Brassicaceae View MSA
123832158 5264 Brassicales-Malvales View MSA
124342449 5266 SBM View MSA
124239741 5268 Malvidae View MSA
124062245 5270 Rosid View MSA
123747167 5271 Pentapetalae View MSA
122796041 5272 Eudicot View MSA
122045393 5273 Angiosperm View MSA
121348214 5274 Embryophyte View MSA
123380774 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain