Gene : Carub.0006s0727 C. rubella v1.1
Defline:  (1 of 3) K07407 - alpha-galactosidase (E3.2.1.22B, galA, rafA) Genomic Order:  727
Name:  ? Carub.0006s0727 Secondary Identifier:  ? PAC:39248955
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY0-1301 Capsella rubella pathologic  
Crubella PWY-6527 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0727 0.5kb upstream 0.5kb upstream 2732 true scaffold_6: 2670640-2673371 Capsella rubella
Carub.0006s0727 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 2672872-2673371 Capsella rubella
Carub.0006s0727 0.5kb downstream 0.5kb downstream 2732 true scaffold_6: 2670140-2672871 Capsella rubella
Carub.0006s0727 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 2670140-2670639 Capsella rubella
Carub.0006s0727 1.0kb upstream 1.0kb upstream 3232 true scaffold_6: 2670640-2673871 Capsella rubella
Carub.0006s0727 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 2672872-2673871 Capsella rubella
Carub.0006s0727 1.0kb downstream 1.0kb downstream 3232 true scaffold_6: 2669640-2672871 Capsella rubella
Carub.0006s0727 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 2669640-2670639 Capsella rubella
Carub.0006s0727 2.0kb upstream 2.0kb upstream 4232 true scaffold_6: 2670640-2674871 Capsella rubella
Carub.0006s0727 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 2672872-2674871 Capsella rubella
Carub.0006s0727 2.0kb downstream 2.0kb downstream 4232 true scaffold_6: 2668640-2672871 Capsella rubella
Carub.0006s0727 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 2668640-2670639 Capsella rubella
Carub.0006s0727 5.0kb upstream 5.0kb upstream 7232 true scaffold_6: 2670640-2677871 Capsella rubella
Carub.0006s0727 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 2672872-2677871 Capsella rubella
Carub.0006s0727 5.0kb downstream 5.0kb downstream 7232 true scaffold_6: 2665640-2672871 Capsella rubella
Carub.0006s0727 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 2665640-2670639 Capsella rubella
Carub.0006s0727 10.0kb upstream 10.0kb upstream 12232 true scaffold_6: 2670640-2682871 Capsella rubella
Carub.0006s0727 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 2672872-2682871 Capsella rubella
Carub.0006s0727 10.0kb downstream 10.0kb downstream 12232 true scaffold_6: 2660640-2672871 Capsella rubella
Carub.0006s0727 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 2660640-2670639 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369228 5261 Brassicaceae View MSA
123840043 5264 Brassicales-Malvales View MSA
124322672 5266 SBM View MSA
124247152 5268 Malvidae View MSA
124073438 5270 Rosid View MSA
123749303 5271 Pentapetalae View MSA
122796981 5272 Eudicot View MSA
122048958 5273 Angiosperm View MSA
121347217 5274 Embryophyte View MSA
123428348 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain