Gene : Carub.0008s1436 C. rubella v1.1
Defline:  (1 of 1) 1.13.11.5 - Homogentisate 1,2-dioxygenase / Homogentisicase Genomic Order:  1436
Name:  ? Carub.0008s1436 Secondary Identifier:  ? PAC:39252320
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TYRFUMCAT-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s1436 0.5kb upstream 0.5kb upstream 3098 true scaffold_8: 8038684-8041781 Capsella rubella
Carub.0008s1436 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 8038684-8039183 Capsella rubella
Carub.0008s1436 0.5kb downstream 0.5kb downstream 3098 true scaffold_8: 8039184-8042281 Capsella rubella
Carub.0008s1436 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 8041782-8042281 Capsella rubella
Carub.0008s1436 1.0kb upstream 1.0kb upstream 3598 true scaffold_8: 8038184-8041781 Capsella rubella
Carub.0008s1436 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 8038184-8039183 Capsella rubella
Carub.0008s1436 1.0kb downstream 1.0kb downstream 3598 true scaffold_8: 8039184-8042781 Capsella rubella
Carub.0008s1436 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 8041782-8042781 Capsella rubella
Carub.0008s1436 2.0kb upstream 2.0kb upstream 4598 true scaffold_8: 8037184-8041781 Capsella rubella
Carub.0008s1436 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 8037184-8039183 Capsella rubella
Carub.0008s1436 2.0kb downstream 2.0kb downstream 4598 true scaffold_8: 8039184-8043781 Capsella rubella
Carub.0008s1436 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 8041782-8043781 Capsella rubella
Carub.0008s1436 5.0kb upstream 5.0kb upstream 7598 true scaffold_8: 8034184-8041781 Capsella rubella
Carub.0008s1436 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 8034184-8039183 Capsella rubella
Carub.0008s1436 5.0kb downstream 5.0kb downstream 7598 true scaffold_8: 8039184-8046781 Capsella rubella
Carub.0008s1436 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 8041782-8046781 Capsella rubella
Carub.0008s1436 10.0kb upstream 10.0kb upstream 12598 true scaffold_8: 8029184-8041781 Capsella rubella
Carub.0008s1436 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 8029184-8039183 Capsella rubella
Carub.0008s1436 10.0kb downstream 10.0kb downstream 12598 true scaffold_8: 8039184-8051781 Capsella rubella
Carub.0008s1436 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 8041782-8051781 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373163 5261 Brassicaceae View MSA
123829499 5264 Brassicales-Malvales View MSA
124338204 5266 SBM View MSA
124236984 5268 Malvidae View MSA
124064618 5270 Rosid View MSA
123740810 5271 Pentapetalae View MSA
122786399 5272 Eudicot View MSA
122042428 5273 Angiosperm View MSA
121346859 5274 Embryophyte View MSA
123424235 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain